Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_M14
(978 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U68258-1|AAB16973.1| 127|Caenorhabditis elegans rab11-like prot... 69 4e-12
AF003139-1|AAB54158.1| 211|Caenorhabditis elegans Rab family pr... 69 4e-12
Z93391-6|CAJ85753.1| 198|Caenorhabditis elegans Hypothetical pr... 51 1e-06
Z79601-4|CAB01884.1| 210|Caenorhabditis elegans Hypothetical pr... 47 2e-05
AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family pr... 47 2e-05
U68256-1|AAB16971.1| 123|Caenorhabditis elegans rab8-like protein. 43 3e-04
AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family pr... 43 3e-04
AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein. 43 3e-04
AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical... 42 7e-04
U80033-5|AAC48200.1| 201|Caenorhabditis elegans Rab family prot... 41 0.001
U68257-1|AAB16972.1| 124|Caenorhabditis elegans rab10-like prot... 41 0.001
U40942-7|AAC47067.2| 218|Caenorhabditis elegans Hypothetical pr... 40 0.004
AL032621-1|CAA21489.1| 216|Caenorhabditis elegans Hypothetical ... 40 0.004
AC024875-6|AAK29988.3| 193|Caenorhabditis elegans Rab family pr... 39 0.005
AC024875-5|AAM44401.1| 203|Caenorhabditis elegans Rab family pr... 39 0.005
U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily ass... 38 0.008
AL132865-6|CAB60605.1| 210|Caenorhabditis elegans Hypothetical ... 38 0.008
Z92830-4|CAB07357.1| 203|Caenorhabditis elegans Hypothetical pr... 38 0.014
Z66499-1|CAA91296.1| 207|Caenorhabditis elegans Hypothetical pr... 38 0.014
Z47808-1|CAA87774.2| 229|Caenorhabditis elegans Hypothetical pr... 38 0.014
U97191-2|AAB52431.1| 214|Caenorhabditis elegans Uncoordinated p... 38 0.014
Z81516-4|CAB04205.1| 208|Caenorhabditis elegans Hypothetical pr... 37 0.019
U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein. 37 0.025
U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein. 37 0.025
U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family pro... 37 0.025
U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family pro... 37 0.025
AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein. 37 0.025
Z66516-6|CAA91357.1| 209|Caenorhabditis elegans Hypothetical pr... 36 0.033
AF000192-2|AAB52888.1| 196|Caenorhabditis elegans Rab family pr... 36 0.058
AB162902-1|BAD32698.1| 196|Caenorhabditis elegans Rab37 protein. 36 0.058
AL031254-1|CAA20282.1| 395|Caenorhabditis elegans Hypothetical ... 35 0.077
Z11505-4|CAA77590.1| 205|Caenorhabditis elegans Hypothetical pr... 35 0.10
U43283-2|AAC69020.1| 205|Caenorhabditis elegans Rab family prot... 35 0.10
Z35640-1|CAA84705.1| 307|Caenorhabditis elegans Hypothetical pr... 34 0.13
U68259-1|AAB16974.1| 69|Caenorhabditis elegans rab14-like prot... 33 0.31
U68251-1|AAB16966.1| 69|Caenorhabditis elegans rab1-like protein. 33 0.41
U68250-1|AAB16965.1| 66|Caenorhabditis elegans rab1-like protein. 32 0.71
AC024859-6|AAK29982.1| 195|Caenorhabditis elegans Hypothetical ... 31 1.2
Z92830-3|CAB07356.1| 201|Caenorhabditis elegans Hypothetical pr... 31 1.6
U68252-1|AAB16967.1| 66|Caenorhabditis elegans rab2-like protein. 29 3.8
Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z48621-11|CAE17932.2| 212|Caenorhabditis elegans Hypothetical p... 29 6.7
DQ016970-1|AAY42967.1| 212|Caenorhabditis elegans Rab GTPase GL... 29 6.7
AL110500-4|CAB54484.1| 215|Caenorhabditis elegans Hypothetical ... 28 8.8
AB112930-1|BAD07035.1| 215|Caenorhabditis elegans Rab27 protein. 28 8.8
>U68258-1|AAB16973.1| 127|Caenorhabditis elegans rab11-like
protein.
Length = 127
Score = 69.3 bits (162), Expect = 4e-12
Identities = 35/48 (72%), Positives = 35/48 (72%)
Frame = +2
Query: 200 FTRNESXLXSXSTIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAITS 343
FTRNE L S STIGV FAT SI V G T A IW TAGQERYRAITS
Sbjct: 31 FTRNEFHLESKSTIGVEFATRSISVEGKTVKAQIWDTAGQERYRAITS 78
Score = 41.5 bits (93), Expect = 9e-04
Identities = 36/101 (35%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Frame = +3
Query: 135 DXLFXVVLXGDSGVGKSSXLSRL----LEMNPI*XLXLP*VWXSQXXV*RSTVXPXXLIY 302
D LF VVL GDSGVGKS+ LSR + + + S ++
Sbjct: 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFHLESKSTIGVEFATRSISVEGKTVKAQIWDTA 68
Query: 303 GXRPGRSGTAPSRRGTTACAVGALLVYHXAXXXSYXXVDRW 425
G R+ T+ RG AVGALLVY A +Y V+RW
Sbjct: 69 GQERYRAITSAYYRG----AVGALLVYDIAKHVTYENVERW 105
>AF003139-1|AAB54158.1| 211|Caenorhabditis elegans Rab family
protein 11.1 protein.
Length = 211
Score = 69.3 bits (162), Expect = 4e-12
Identities = 35/48 (72%), Positives = 35/48 (72%)
Frame = +2
Query: 200 FTRNESXLXSXSTIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAITS 343
FTRNE L S STIGV FAT SI V G T A IW TAGQERYRAITS
Sbjct: 31 FTRNEFNLESKSTIGVEFATRSISVEGKTVKAQIWDTAGQERYRAITS 78
Score = 41.5 bits (93), Expect = 9e-04
Identities = 36/101 (35%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Frame = +3
Query: 135 DXLFXVVLXGDSGVGKSSXLSRL----LEMNPI*XLXLP*VWXSQXXV*RSTVXPXXLIY 302
D LF VVL GDSGVGKS+ LSR + + + S ++
Sbjct: 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSISVEGKTVKAQIWDTA 68
Query: 303 GXRPGRSGTAPSRRGTTACAVGALLVYHXAXXXSYXXVDRW 425
G R+ T+ RG AVGALLVY A +Y V+RW
Sbjct: 69 GQERYRAITSAYYRG----AVGALLVYDIAKHVTYENVERW 105
>Z93391-6|CAJ85753.1| 198|Caenorhabditis elegans Hypothetical
protein W04G5.2 protein.
Length = 198
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/44 (56%), Positives = 26/44 (59%)
Frame = +2
Query: 200 FTRNESXLXSXSTIGVXFATXSIEVXGXTXXAHIWXTAGQERYR 331
FTRNE L S TIGV FAT I V G IW TAG ER+R
Sbjct: 28 FTRNEFNLKSKPTIGVEFATKIISVEGKAVKVQIWDTAGMERFR 71
Score = 31.5 bits (68), Expect = 0.94
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Frame = +3
Query: 141 LFXVVLXGDSGVGKSSXLSRLL--EMNPI*XLXLP*VWXSQXXV*RSTVXPXXL--IYGX 308
LF +VL G+ GVGKS+ LSR E N + + ++ + G
Sbjct: 8 LFKIVLIGNPGVGKSNLLSRFTRNEFNLKSKPTIGVEFATKIISVEGKAVKVQIWDTAGM 67
Query: 309 RPGRSGTAPSRRGTTACAVGALLVYHXAXXXSYXXVDRW 425
R G + RG A+GALLVY + +Y V++W
Sbjct: 68 ERFRCGASSYYRG----ALGALLVYDISKHKTYESVEQW 102
>Z79601-4|CAB01884.1| 210|Caenorhabditis elegans Hypothetical
protein K09A9.2 protein.
Length = 210
Score = 47.2 bits (107), Expect = 2e-05
Identities = 23/47 (48%), Positives = 26/47 (55%)
Frame = +2
Query: 200 FTRNESXLXSXSTIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAIT 340
FT + TIGV F T IEV G IW TAGQER+RA+T
Sbjct: 31 FTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT 77
>AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family
protein 1 protein.
Length = 205
Score = 47.2 bits (107), Expect = 2e-05
Identities = 22/37 (59%), Positives = 25/37 (67%)
Frame = +2
Query: 233 STIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAITS 343
STIGV F +IE+ G T IW TAGQER+R ITS
Sbjct: 42 STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITS 78
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 135 DXLFXVVLXGDSGVGKSSXLSRLLE 209
D LF ++L GDSGVGKS L R +
Sbjct: 9 DYLFKLLLIGDSGVGKSCLLLRFAD 33
>U68256-1|AAB16971.1| 123|Caenorhabditis elegans rab8-like protein.
Length = 123
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +2
Query: 233 STIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAITS 343
STIG+ F +IE+ G IW TAGQER+R IT+
Sbjct: 39 STIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITT 75
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 135 DXLFXVVLXGDSGVGKSSXLSR 200
D LF ++L GDSGVGK+ L R
Sbjct: 6 DYLFKLLLIGDSGVGKTCVLFR 27
>AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family
protein 8 protein.
Length = 211
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +2
Query: 233 STIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAITS 343
STIG+ F +IE+ G IW TAGQER+R IT+
Sbjct: 39 STIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITT 75
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 135 DXLFXVVLXGDSGVGKSSXLSR 200
D LF ++L GDSGVGK+ L R
Sbjct: 6 DYLFKLLLIGDSGVGKTCVLFR 27
>AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein.
Length = 211
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +2
Query: 233 STIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAITS 343
STIG+ F +IE+ G IW TAGQER+R IT+
Sbjct: 39 STIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITT 75
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 135 DXLFXVVLXGDSGVGKSSXLSR 200
D LF ++L GDSGVGK+ L R
Sbjct: 6 DYLFKLLLIGDSGVGKTCVLFR 27
>AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical
protein Y47D3A.25 protein.
Length = 209
Score = 41.9 bits (94), Expect = 7e-04
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +2
Query: 233 STIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAITS 343
+TIGV F ++++ G IW TAGQER+R ITS
Sbjct: 41 TTIGVDFKIRTMDINGQRVKLQIWDTAGQERFRTITS 77
Score = 31.9 bits (69), Expect = 0.71
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 135 DXLFXVVLXGDSGVGKSSXLSRLLE 209
D LF +++ GDSGVGKSS L R +
Sbjct: 8 DHLFKLLIIGDSGVGKSSLLLRFAD 32
>U80033-5|AAC48200.1| 201|Caenorhabditis elegans Rab family protein
10 protein.
Length = 201
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +2
Query: 233 STIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAITS 343
STIG+ F +IE+ G IW TAGQER+ IT+
Sbjct: 40 STIGIDFKIKTIELKGKKIKLQIWDTAGQERFHTITT 76
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +3
Query: 123 RMNIDXLFXVVLXGDSGVGKSSXLSR 200
R D LF ++L GDSGVGK+ L R
Sbjct: 3 RRPYDMLFKLLLIGDSGVGKTCILYR 28
>U68257-1|AAB16972.1| 124|Caenorhabditis elegans rab10-like
protein.
Length = 124
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +2
Query: 233 STIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAITS 343
STIG+ F +IE+ G IW TAGQER+ IT+
Sbjct: 40 STIGIDFKIKTIELKGKKIKLQIWDTAGQERFHTITT 76
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +3
Query: 123 RMNIDXLFXVVLXGDSGVGKSSXLSR 200
R D LF ++L GDSGVGK+ L R
Sbjct: 3 RRPYDMLFKLLLIGDSGVGKTCILYR 28
>U40942-7|AAC47067.2| 218|Caenorhabditis elegans Hypothetical
protein K02E10.1 protein.
Length = 218
Score = 39.5 bits (88), Expect = 0.004
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +2
Query: 173 CG*KQXSVAFTRNESXLXSXSTIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAI 337
CG + F N + ST+GV F +I++ +W TAG ERYR I
Sbjct: 17 CGKSCILLRFAENSFRMDHISTLGVDFKLKTIKLGRDKIRLELWDTAGMERYRTI 71
>AL032621-1|CAA21489.1| 216|Caenorhabditis elegans Hypothetical
protein Y45F3A.2 protein.
Length = 216
Score = 39.5 bits (88), Expect = 0.004
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +2
Query: 200 FTRNESXLXSXSTIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAIT 340
FT+ +TIGV F +++V IW TAGQER+R+IT
Sbjct: 27 FTQGIFPPGQSATIGVDFMIKTVKVGNDKIKLQIWDTAGQERFRSIT 73
>AC024875-6|AAK29988.3| 193|Caenorhabditis elegans Rab family
protein 18, isoform a protein.
Length = 193
Score = 39.1 bits (87), Expect = 0.005
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +2
Query: 233 STIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAIT 340
+TIGV F S+ + G IW TAGQER+R +T
Sbjct: 15 ATIGVDFRVTSMAIDGNRVKLAIWDTAGQERFRTLT 50
>AC024875-5|AAM44401.1| 203|Caenorhabditis elegans Rab family
protein 18, isoform b protein.
Length = 203
Score = 39.1 bits (87), Expect = 0.005
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +2
Query: 233 STIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAIT 340
+TIGV F S+ + G IW TAGQER+R +T
Sbjct: 42 ATIGVDFRVTSMAIDGNRVKLAIWDTAGQERFRTLT 77
>U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily
assigned gene nameprotein 312 protein.
Length = 656
Score = 38.3 bits (85), Expect = 0.008
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 233 STIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAI 337
ST+GV F ++ V G +W TAGQER+R++
Sbjct: 492 STLGVDFHVKTVNVDGRNVALQLWDTAGQERFRSL 526
>AL132865-6|CAB60605.1| 210|Caenorhabditis elegans Hypothetical
protein Y62E10A.9 protein.
Length = 210
Score = 38.3 bits (85), Expect = 0.008
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +2
Query: 233 STIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAIT 340
+TIGV F ++ V G IW T GQER+R IT
Sbjct: 41 TTIGVDFTMKTLVVDGKRVKLQIWDTGGQERFRTIT 76
>Z92830-4|CAB07357.1| 203|Caenorhabditis elegans Hypothetical
protein F11A5.4 protein.
Length = 203
Score = 37.5 bits (83), Expect = 0.014
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 233 STIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAI 337
ST+G+ F ++E+ H+W T GQER+R++
Sbjct: 37 STLGIEFGFRNLEIDRKKVKLHVWDTCGQERFRSL 71
>Z66499-1|CAA91296.1| 207|Caenorhabditis elegans Hypothetical
protein T01B7.3 protein.
Length = 207
Score = 37.5 bits (83), Expect = 0.014
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +2
Query: 200 FTRNESXLXSXSTIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAI 337
F N+ STI F ++ V HIW TAGQE+Y A+
Sbjct: 32 FVENKFSCKHLSTIQASFQNKTVNVEDCQADLHIWDTAGQEKYHAL 77
>Z47808-1|CAA87774.2| 229|Caenorhabditis elegans Hypothetical
protein D2013.1 protein.
Length = 229
Score = 37.5 bits (83), Expect = 0.014
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 200 FTRNESXLXSXSTIGVXFATXSIEVX-GXTXXAHIWXTAGQERYRAIT 340
FT + S T+GV F IE+ G +W TAGQE++R+IT
Sbjct: 37 FTEGKMAEISDPTVGVDFYARMIELRPGYRVKLQLWDTAGQEKFRSIT 84
>U97191-2|AAB52431.1| 214|Caenorhabditis elegans Uncoordinated
protein 108 protein.
Length = 214
Score = 37.5 bits (83), Expect = 0.014
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +2
Query: 236 TIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAIT 340
TIGV F + + G IW TAGQE +R+IT
Sbjct: 38 TIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSIT 72
>Z81516-4|CAB04205.1| 208|Caenorhabditis elegans Hypothetical
protein F26H9.6 protein.
Length = 208
Score = 37.1 bits (82), Expect = 0.019
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 200 FTRNESXLXSXSTIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAI 337
F + + STIG F T ++ + T IW TAGQERY ++
Sbjct: 39 FVKGQFHEYQESTIGAAFLTQTVCLDDATIKFEIWDTAGQERYHSL 84
>U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 36.7 bits (81), Expect = 0.025
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 233 STIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAITS 343
ST+G+ F ++ IW TAGQERYR IT+
Sbjct: 53 STVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITT 89
>U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 36.7 bits (81), Expect = 0.025
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 233 STIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAITS 343
ST+G+ F ++ IW TAGQERYR IT+
Sbjct: 53 STVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITT 89
>U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family
protein 3, isoform b protein.
Length = 219
Score = 36.7 bits (81), Expect = 0.025
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 233 STIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAITS 343
ST+G+ F ++ IW TAGQERYR IT+
Sbjct: 53 STVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITT 89
>U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family
protein 3, isoform a protein.
Length = 233
Score = 36.7 bits (81), Expect = 0.025
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 233 STIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAITS 343
ST+G+ F ++ IW TAGQERYR IT+
Sbjct: 67 STVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITT 103
>AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein.
Length = 219
Score = 36.7 bits (81), Expect = 0.025
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 233 STIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAITS 343
ST+G+ F ++ IW TAGQERYR IT+
Sbjct: 53 STVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITT 89
>Z66516-6|CAA91357.1| 209|Caenorhabditis elegans Hypothetical
protein W03C9.3 protein.
Length = 209
Score = 36.3 bits (80), Expect = 0.033
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 233 STIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAI 337
+TIG F T + + T IW TAGQER++++
Sbjct: 40 ATIGADFLTRDVNIDDRTVTLQIWDTAGQERFQSL 74
>AF000192-2|AAB52888.1| 196|Caenorhabditis elegans Rab family
protein 37 protein.
Length = 196
Score = 35.5 bits (78), Expect = 0.058
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 233 STIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAITS 343
ST+G+ + I + IW TAGQER+R++T+
Sbjct: 34 STVGIDYRNKLITMGDKKVKLQIWDTAGQERFRSVTT 70
>AB162902-1|BAD32698.1| 196|Caenorhabditis elegans Rab37 protein.
Length = 196
Score = 35.5 bits (78), Expect = 0.058
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 233 STIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAITS 343
ST+G+ + I + IW TAGQER+R++T+
Sbjct: 34 STVGIDYRNKLITMGDKKVKLQIWDTAGQERFRSVTT 70
>AL031254-1|CAA20282.1| 395|Caenorhabditis elegans Hypothetical
protein 4R79.2 protein.
Length = 395
Score = 35.1 bits (77), Expect = 0.077
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 200 FTRNESXLXSXSTIGVXFATXSIEVXGXTXXA-HIWXTAGQERYRAIT 340
F N +TIGV F ++++ A +W TAGQER+R+IT
Sbjct: 222 FCHNRFKPLFNATIGVDFTVKTMKIPPNRAIAMQLWDTAGQERFRSIT 269
>Z11505-4|CAA77590.1| 205|Caenorhabditis elegans Hypothetical
protein F59B2.7 protein.
Length = 205
Score = 34.7 bits (76), Expect = 0.10
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 233 STIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAI 337
+TIG+ F + ++ + T +W TAGQER+R++
Sbjct: 42 ATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSL 76
>U43283-2|AAC69020.1| 205|Caenorhabditis elegans Rab family protein
6.2 protein.
Length = 205
Score = 34.7 bits (76), Expect = 0.10
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 233 STIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAI 337
+TIG+ F + ++ + T +W TAGQER+R++
Sbjct: 41 ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 75
>Z35640-1|CAA84705.1| 307|Caenorhabditis elegans Hypothetical
protein F43D9.2 protein.
Length = 307
Score = 34.3 bits (75), Expect = 0.13
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 233 STIGVXFATXSIEVXGXTXXAHIWXTAGQERYR 331
+TIGV F S + +W TAGQERYR
Sbjct: 131 ATIGVDFRERSCVIENELLRVQLWDTAGQERYR 163
>U68259-1|AAB16974.1| 69|Caenorhabditis elegans rab14-like
protein.
Length = 69
Score = 33.1 bits (72), Expect = 0.31
Identities = 17/39 (43%), Positives = 18/39 (46%)
Frame = +2
Query: 200 FTRNESXLXSXSTIGVXFATXSIEVXGXTXXAHIWXTAG 316
FT + TIGV F T IEV G IW TAG
Sbjct: 31 FTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 69
>U68251-1|AAB16966.1| 69|Caenorhabditis elegans rab1-like protein.
Length = 69
Score = 32.7 bits (71), Expect = 0.41
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +2
Query: 233 STIGVXFATXSIEVXGXTXXAHIWXTAG 316
STIGV F +IE+ G T IW TAG
Sbjct: 42 STIGVDFKIRTIELDGKTIKLQIWDTAG 69
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 135 DXLFXVVLXGDSGVGKSSXLSRLLE 209
D LF ++L GDSGVGKS L R +
Sbjct: 9 DYLFKLLLIGDSGVGKSCLLLRFAD 33
>U68250-1|AAB16965.1| 66|Caenorhabditis elegans rab1-like protein.
Length = 66
Score = 31.9 bits (69), Expect = 0.71
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 135 DXLFXVVLXGDSGVGKSSXLSRLLE 209
D LF +++ GDSGVGKSS L R +
Sbjct: 8 DHLFKLLIIGDSGVGKSSLLLRFAD 32
>AC024859-6|AAK29982.1| 195|Caenorhabditis elegans Hypothetical
protein Y71H2AM.12 protein.
Length = 195
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 200 FTRNESXLXSXSTIGVXFATXSIEVX-GXTXXAHIWXTAGQERYRAI 337
F N +TIG+ F +++ G + +W TAGQER+R +
Sbjct: 26 FLDNTFETDPLTTIGIDFKHKIVQLNDGQSIRLQLWDTAGQERFRQL 72
>Z92830-3|CAB07356.1| 201|Caenorhabditis elegans Hypothetical
protein F11A5.3 protein.
Length = 201
Score = 30.7 bits (66), Expect = 1.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 233 STIGVXFATXSIEVXGXTXXAHIWXTAGQERYRAI 337
+T+GV F +++ +W T GQE +R+I
Sbjct: 37 TTLGVEFGYKDLQIDKYKVRLRVWDTCGQENFRSI 71
Score = 29.1 bits (62), Expect = 5.0
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Frame = +3
Query: 135 DXLFXVVLXGDSGVGKSSXLSRLLE--MNPI*XLXLP*VWXSQXXV*RSTVXPXXLIYGX 308
D +F V+ GD GVGKS+ L R + +PI L + + + L
Sbjct: 4 DHMFKYVIIGDGGVGKSNLLLRFTDELFDPIHTTTLGVEFGYKDL--QIDKYKVRLRVWD 61
Query: 309 RPGRSGTAPSRRGTTACAVGALLVYHXAXXXSYXXVDRW 425
G+ R A+GALLVY S+ +++W
Sbjct: 62 TCGQENFRSIIRAYYRNALGALLVYDITCRKSFVHLEQW 100
>U68252-1|AAB16967.1| 66|Caenorhabditis elegans rab2-like protein.
Length = 66
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 236 TIGVXFATXSIEVXGXTXXAHIWXTAGQE 322
TIGV F + + G +W TAGQE
Sbjct: 38 TIGVEFGARMVTIDGKQIKLQMWDTAGQE 66
>Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical
protein C17G1.4b protein.
Length = 844
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Frame = +1
Query: 799 PNHTX-PAHPSPNXAXAXXYSPXXS---SPTQXXTPH 897
P H P HPSPN A +P S PTQ PH
Sbjct: 478 PTHLQSPVHPSPNGAPPAYNAPSSSKTPDPTQQQRPH 514
>Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical
protein C17G1.4a protein.
Length = 925
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Frame = +1
Query: 799 PNHTX-PAHPSPNXAXAXXYSPXXS---SPTQXXTPH 897
P H P HPSPN A +P S PTQ PH
Sbjct: 478 PTHLQSPVHPSPNGAPPAYNAPSSSKTPDPTQQQRPH 514
>Z48621-11|CAE17932.2| 212|Caenorhabditis elegans Hypothetical
protein R07B1.12 protein.
Length = 212
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +2
Query: 200 FTRNESXLXSXSTIGVXFATXSIEVXGXTXX-AHIWXTAGQERYRAIT 340
F N +TIGV FA + V T IW +GQ+RY +T
Sbjct: 31 FVHNVFSSNYKTTIGVDFALKILPVDENTVVHLQIWDISGQDRYGVMT 78
>DQ016970-1|AAY42967.1| 212|Caenorhabditis elegans Rab GTPase GLO-1
protein.
Length = 212
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +2
Query: 200 FTRNESXLXSXSTIGVXFATXSIEVXGXTXX-AHIWXTAGQERYRAIT 340
F N +TIGV FA + V T IW +GQ+RY +T
Sbjct: 31 FVHNVFSSNYKTTIGVDFALKILPVDENTVVHLQIWDISGQDRYGVMT 78
>AL110500-4|CAB54484.1| 215|Caenorhabditis elegans Hypothetical
protein Y87G2A.4 protein.
Length = 215
Score = 28.3 bits (60), Expect = 8.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 278 GXTXXAHIWXTAGQERYRAITS 343
G +W TAGQER+R++T+
Sbjct: 62 GQRVLLQLWDTAGQERFRSLTT 83
>AB112930-1|BAD07035.1| 215|Caenorhabditis elegans Rab27 protein.
Length = 215
Score = 28.3 bits (60), Expect = 8.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 278 GXTXXAHIWXTAGQERYRAITS 343
G +W TAGQER+R++T+
Sbjct: 62 GQRVLLQLWDTAGQERFRSLTT 83
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,661,194
Number of Sequences: 27780
Number of extensions: 131834
Number of successful extensions: 313
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2542323834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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