Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_M12
         (883 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0889 - 32532495-32533832,32533919-32534151,32534321-325344...    37   0.025
05_01_0065 + 461182-461271,462222-462288,462408-462664                 36   0.043
08_02_0958 - 23044708-23046045,23046131-23046363,23047059-230471...    36   0.057
08_02_0956 + 23026108-23027146,23027255-23027395,23029334-230295...    36   0.057
01_07_0340 + 42851330-42851413,42852179-42852245,42852336-42852592     33   0.23 

>02_05_0889 -
           32532495-32533832,32533919-32534151,32534321-32534461,
           32534564-32535521
          Length = 889

 Score = 36.7 bits (81), Expect = 0.025
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 270 WRVXXGX-YXFXDFLEKXPGGAXWLELSKGTDITEAFESXHLNSSVNKVLEXYYV 431
           W +  G  Y    FL+  PGGA  + ++ GTD TE F++ H +     +LE Y +
Sbjct: 531 WIIVHGHVYDCTGFLKDHPGGADSIMINAGTDCTEEFDAIH-SDKARGLLEMYRI 584


>05_01_0065 + 461182-461271,462222-462288,462408-462664
          Length = 137

 Score = 35.9 bits (79), Expect = 0.043
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 270 WRVXXGX-YXFXDFLEKXPGGAXWLELSKGTDITEAFESXHLNSSVNKVLEXYYV 431
           W +  G  Y    FLE  PGG   L  S G D T+ FE    +++   +++ YYV
Sbjct: 24  WLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSTTARAMMDEYYV 78


>08_02_0958 -
           23044708-23046045,23046131-23046363,23047059-23047199,
           23047296-23048334
          Length = 916

 Score = 35.5 bits (78), Expect = 0.057
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 270 WRVXXGX-YXFXDFLEKXPGGAXWLELSKGTDITEAFESXHLNSSVNKVLEXYYV 431
           W V  G  Y    FL+  PGGA  + ++ GTD TE F++ H +     +L+ Y +
Sbjct: 559 WIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAIH-SDKAKALLDTYRI 612


>08_02_0956 +
           23026108-23027146,23027255-23027395,23029334-23029566,
           23029652-23030989
          Length = 916

 Score = 35.5 bits (78), Expect = 0.057
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 270 WRVXXGX-YXFXDFLEKXPGGAXWLELSKGTDITEAFESXHLNSSVNKVLEXYYV 431
           W V  G  Y    FL+  PGGA  + ++ GTD TE F++ H +     +L+ Y +
Sbjct: 559 WIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAIH-SDKAKALLDTYRI 612


>01_07_0340 + 42851330-42851413,42852179-42852245,42852336-42852592
          Length = 135

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 270 WRVXXGX-YXFXDFLEKXPGGAXWLELSKGTDITEAFESXHLNSSVNKVLEXYYV 431
           W +  G  Y    FLE  PGG   L  S   D T+ FE    +++   +++ YYV
Sbjct: 22  WLIIGGKVYNVTKFLEDHPGGDDVLLSSTAKDATDDFEDVGHSTTARAMMDEYYV 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,097,048
Number of Sequences: 37544
Number of extensions: 161588
Number of successful extensions: 182
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)