Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_M11
         (1013 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...    40   7e-04
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...    39   0.001

>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score = 39.5 bits (88), Expect = 7e-04
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = +3

Query: 237 PGKVXKRMGKXXIHKXSXIXPFVXVVNXNXXMPPRY 344
           P KV K MG   I K S + PF+ V+N N  MP RY
Sbjct: 50  PLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTRY 85



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 18/59 (30%), Positives = 24/59 (40%)
 Frame = +2

Query: 86  MGKIMKPGKXVLVXXXXXXXXXXXX*SRITXKVPPRXHTGHAXVAGIDXYPRQSAQEDG 262
           M KI+KPGK  LV               +          GHA VAG++ YP +  +  G
Sbjct: 1   MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPF-GHAVVAGVERYPLKVTKSMG 58


>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = +3

Query: 237 PGKVXKRMGKXXIHKXSXIXPFVXVVNXNXXMPPRY 344
           P KV K MG   I + S + PF+ VVN N  MP RY
Sbjct: 50  PLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRY 85



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 18/59 (30%), Positives = 24/59 (40%)
 Frame = +2

Query: 86  MGKIMKPGKXVLVXXXXXXXXXXXX*SRITXKVPPRXHTGHAXVAGIDXYPRQSAQEDG 262
           M KI+KPGK  L+               I          GHA VAG++ YP +  +  G
Sbjct: 1   MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPF-GHAVVAGVERYPLKVTKSMG 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,594,131
Number of Sequences: 5004
Number of extensions: 16101
Number of successful extensions: 32
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 527257104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)