Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_M11
         (1013 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89308-1|AAB48626.1|  136|Caenorhabditis elegans ribosomal prote...    40   0.004
AF003143-5|AAK68266.1|  136|Caenorhabditis elegans Ribosomal pro...    40   0.004

>U89308-1|AAB48626.1|  136|Caenorhabditis elegans ribosomal protein
           L27 homolog protein.
          Length = 136

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 24/60 (40%), Positives = 30/60 (50%)
 Frame = +2

Query: 86  MGKIMKPGKXVLVXXXXXXXXXXXX*SRITXKVPPRXHTGHAXVAGIDXYPRQSAQEDGK 265
           MGKIMKPGK VLV              +    V  R +  HA +AGID YP +  ++ GK
Sbjct: 1   MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYP-HAIIAGIDRYPLKVTKDMGK 59



 Score = 35.1 bits (77), Expect = 0.080
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 237 PGKVXKRMGKXXIHKXSXIXPFVXVVNXNXXMPPRYT 347
           P KV K MGK  I K + + PF+ VV+    +P RY+
Sbjct: 50  PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYS 86


>AF003143-5|AAK68266.1|  136|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 27 protein.
          Length = 136

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 24/60 (40%), Positives = 30/60 (50%)
 Frame = +2

Query: 86  MGKIMKPGKXVLVXXXXXXXXXXXX*SRITXKVPPRXHTGHAXVAGIDXYPRQSAQEDGK 265
           MGKIMKPGK VLV              +    V  R +  HA +AGID YP +  ++ GK
Sbjct: 1   MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYP-HAIIAGIDRYPLKVTKDMGK 59



 Score = 35.1 bits (77), Expect = 0.080
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 237 PGKVXKRMGKXXIHKXSXIXPFVXVVNXNXXMPPRYT 347
           P KV K MGK  I K + + PF+ VV+    +P RY+
Sbjct: 50  PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYS 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,452,138
Number of Sequences: 27780
Number of extensions: 109599
Number of successful extensions: 260
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2667870690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)