Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_M10
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.6  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   8.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/46 (28%), Positives = 13/46 (28%)
 Frame = +3

Query: 633 PPPPXXXFXPPPXXXPXPXXXXXXXXXXXXXXXPPXXXXXXPPPXP 770
           PPPP     P P   P P               PP       PP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 19/60 (31%), Positives = 19/60 (31%)
 Frame = +2

Query: 731 PPXPXXXXPPPXPXXXFXPXXPPXXXXXXXXPPPXXXXXXXXXXXXXXXPXPPXFXPPPP 910
           PP P    P P P     P  PP        PPP               P PP   PPPP
Sbjct: 734 PPPPAVIVPTPAPAP--IPVPPPAPIMGGPPPPP------PPPGVAGAGPPPP--PPPPP 783



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +2

Query: 722 PXXPPXPXXXXPPPXPXXXFXPXXPPXXXXXXXXPPP 832
           P   P P    PPP P     P  PP        PPP
Sbjct: 742 PTPAPAPI-PVPPPAPIMGGPPPPPPPPGVAGAGPPP 777


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 633  PPPPXXXFXPPPXXXPXP 686
            PPPP     PPP   P P
Sbjct: 1707 PPPPPMSVPPPPSAPPMP 1724


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 21/95 (22%), Positives = 21/95 (22%), Gaps = 4/95 (4%)
 Frame = +2

Query: 638 PPXXXXFXPPXXXPPPXXXXXXXXXXXXPXXPPXPXXXXPPP----XPXXXFXPXXPPXX 805
           PP      P    PPP            P     P    PPP     P     P      
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE 267

Query: 806 XXXXXXPPPXXXXXXXXXXXXXXXPXPPXFXPPPP 910
                 PPP                 P    PPPP
Sbjct: 268 PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 302


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 635 PPPXXXXFXPPXXXPPP 685
           PPP    F PP   PPP
Sbjct: 11  PPPPPPGFEPPSQPPPP 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,881,748
Number of Sequences: 5004
Number of extensions: 30345
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)