Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_M07
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    38   0.002
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    35   0.017
SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces pom...    27   3.4  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    27   3.4  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    27   4.5  

>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 383 ELAAEVGQPLRVVGWYHSHPHITVWPSHV 469
           ++  + G+P  VVGWYHSHP    W S V
Sbjct: 96  DMLKQTGRPEMVVGWYHSHPGFGCWLSSV 124


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 34.7 bits (76), Expect = 0.017
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 302 SFAVWIKNLTVLKXQKXQLVQATVRAEELAAEVGQPLRVVGWYHSHPHITVWPSHV 469
           SFA+ ++          +  + +V+   L   V +   V+GWYHSHP+   W S V
Sbjct: 75  SFALPVEGTETRVNAHEEAQEYSVQYHTLCKSVYRHENVIGWYHSHPNYGCWLSGV 130


>SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 678 RDTNSASNNLKEEEDEAFNNEISYDDTDDIVTKQHNAAVRTIAIGQXVDKM 830
           ++ N ASN  KE      N+E S  +T+ +   + N+++  +A+ +   KM
Sbjct: 43  KNANKASNPEKESPVSVSNDEDSESETELLDMLKGNSSLAALALAEGQTKM 93


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 705 LKEEEDEAFNNEISYDDTDDIVTKQHNAAVRTIAIGQXVDKMSXQAXRL 851
           LK  ++E F+N++  +  +  V   HN+   TI +G   +    +  RL
Sbjct: 572 LKCLQEEEFDNKVLLEQVESNVQTDHNSPCNTIYVGNLSNPDQEKKLRL 620


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +3

Query: 663 VNKQFRDTNSASNNLKEEEDEAFNNE 740
           V+K  RD N++  ++ EE+ EAF++E
Sbjct: 29  VSKTSRDKNASITDIHEEDIEAFSDE 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,152,430
Number of Sequences: 5004
Number of extensions: 32342
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)