Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_M07
         (865 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077534-8|AAC26287.1|  312|Caenorhabditis elegans Proteasome re...    37   0.016
U00032-7|AAA50633.1|  319|Caenorhabditis elegans Hypothetical pr...    35   0.065
U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signaloso...    33   0.20 
Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical pr...    32   0.46 
AY204174-1|AAO39178.1|  344|Caenorhabditis elegans nuclear recep...    29   5.7  
AY204173-1|AAO39177.1|  369|Caenorhabditis elegans nuclear recep...    29   5.7  
AY204172-1|AAO39176.1|  234|Caenorhabditis elegans nuclear recep...    29   5.7  
AF043694-2|AAT27251.1|  387|Caenorhabditis elegans Nuclear hormo...    29   5.7  
AF043694-1|AAC24283.1|  412|Caenorhabditis elegans Nuclear hormo...    29   5.7  

>AF077534-8|AAC26287.1|  312|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 11 protein.
          Length = 312

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 383 ELAAEVGQPLRVVGWYHSHPHITVWPSHV 469
           ++  + G+P  VVGWYHSHP    W S V
Sbjct: 99  DMLKQTGRPEMVVGWYHSHPGFGCWLSGV 127


>U00032-7|AAA50633.1|  319|Caenorhabditis elegans Hypothetical
           protein F37A4.5 protein.
          Length = 319

 Score = 35.1 bits (77), Expect = 0.065
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +2

Query: 383 ELAAEVGQPLRVVGWYHSHPHITVWPSHV 469
           +L   VG+   VVGWYHSHP    W S V
Sbjct: 95  DLLKLVGRTENVVGWYHSHPGFGCWLSSV 123


>U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signalosome
           subunit protein 5 protein.
          Length = 368

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 383 ELAAEVGQPLRVVGWYHSHPHITVWPSHV 469
           E+    G+  +VVGWYHSHP    W S +
Sbjct: 123 EMCDTEGRKEKVVGWYHSHPGYGCWLSGI 151


>Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical
           protein C03E10.5 protein.
          Length = 623

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +2

Query: 428 YHSHPHIT---VWPSHV*FGYSINVSKDGC*FCWNYFCSISYRPINKGPFS 571
           Y  HP I    VW   V F + +N  +DG  +CWNYF S    P ++  ++
Sbjct: 231 YGFHPTIRNGKVWCIRVFFHFVLNY-QDGSDYCWNYFHSTLSGPADENEYN 280


>AY204174-1|AAO39178.1|  344|Caenorhabditis elegans nuclear receptor
           NHR-64 protein.
          Length = 344

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +2

Query: 248 FSARFXLMVHLFQ*CHQ*SFAVWIKNLTVLKXQKXQLVQATVRAEELAAEVGQPLR 415
           FSA+  +M   F+  H  S AVW+ N T L     ++      AE +  +V  P+R
Sbjct: 169 FSAQHLVMCAAFRSIHL-SDAVWLTNETCLHKDSPKIPDMNRVAERIIDQVTNPMR 223


>AY204173-1|AAO39177.1|  369|Caenorhabditis elegans nuclear receptor
           NHR-64 protein.
          Length = 369

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +2

Query: 248 FSARFXLMVHLFQ*CHQ*SFAVWIKNLTVLKXQKXQLVQATVRAEELAAEVGQPLR 415
           FSA+  +M   F+  H  S AVW+ N T L     ++      AE +  +V  P+R
Sbjct: 194 FSAQHLVMCAAFRSIHL-SDAVWLTNETCLHKDSPKIPDMNRVAERIIDQVTNPMR 248


>AY204172-1|AAO39176.1|  234|Caenorhabditis elegans nuclear receptor
           NHR-64 protein.
          Length = 234

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +2

Query: 248 FSARFXLMVHLFQ*CHQ*SFAVWIKNLTVLKXQKXQLVQATVRAEELAAEVGQPLR 415
           FSA+  +M   F+  H  S AVW+ N T L     ++      AE +  +V  P+R
Sbjct: 59  FSAQHLVMCAAFRSIHL-SDAVWLTNETCLHKDSPKIPDMNRVAERIIDQVTNPMR 113


>AF043694-2|AAT27251.1|  387|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 64, isoform b protein.
          Length = 387

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +2

Query: 248 FSARFXLMVHLFQ*CHQ*SFAVWIKNLTVLKXQKXQLVQATVRAEELAAEVGQPLR 415
           FSA+  +M   F+  H  S AVW+ N T L     ++      AE +  +V  P+R
Sbjct: 212 FSAQHLVMCAAFRSIHL-SDAVWLTNETCLHKDSPKIPDMNRVAERIIDQVTNPMR 266


>AF043694-1|AAC24283.1|  412|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 64, isoform a protein.
          Length = 412

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +2

Query: 248 FSARFXLMVHLFQ*CHQ*SFAVWIKNLTVLKXQKXQLVQATVRAEELAAEVGQPLR 415
           FSA+  +M   F+  H  S AVW+ N T L     ++      AE +  +V  P+R
Sbjct: 237 FSAQHLVMCAAFRSIHL-SDAVWLTNETCLHKDSPKIPDMNRVAERIIDQVTNPMR 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,011,073
Number of Sequences: 27780
Number of extensions: 182557
Number of successful extensions: 494
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)