Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_M06
         (865 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23647-8|AAK29993.1|   54|Caenorhabditis elegans Hypothetical pr...    29   4.3  
L07144-2|AAK21439.1|   54|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical p...    29   5.7  
Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical p...    29   5.7  
AC084153-7|AAK84593.1|  451|Caenorhabditis elegans Hypothetical ...    28   9.9  

>L23647-8|AAK29993.1|   54|Caenorhabditis elegans Hypothetical
           protein ZC262.5 protein.
          Length = 54

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 111 LITXFAAGVLADXFXQITAVVTSQCTKNNAEDKVPEVEAALRT 239
           ++   AAG+    + QI A V  QCTK  A  K P  +A L+T
Sbjct: 1   MVAWRAAGLNYVRYSQIAAQVVRQCTKGGANVKKP--QATLKT 41


>L07144-2|AAK21439.1|   54|Caenorhabditis elegans Hypothetical
           protein R05D3.6 protein.
          Length = 54

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 111 LITXFAAGVLADXFXQITAVVTSQCTKNNAEDKVPEVEAALRT 239
           ++   AAG+    + QI A V  QCTK  A  K P  +A L+T
Sbjct: 1   MVAWRAAGLNYVRYSQIAAQVVRQCTKGGANVKKP--QATLKT 41


>Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical
           protein Y69H2.10b protein.
          Length = 975

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = +1

Query: 451 PINSSTLCATRXGXRIALFI--AEGGPECFQQKTENLKTCFLKFETELPHC-GIR 606
           P+NS+  C  R   R        + G +CF   T N  TC+ K +     C GI+
Sbjct: 304 PLNSTQTCIPRLPDRRYCIDEPCQVGMKCFDNVTSNAYTCYTKLDGTAGECLGIK 358


>Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical
           protein Y69H2.10a protein.
          Length = 572

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = +1

Query: 451 PINSSTLCATRXGXRIALFI--AEGGPECFQQKTENLKTCFLKFETELPHC-GIR 606
           P+NS+  C  R   R        + G +CF   T N  TC+ K +     C GI+
Sbjct: 304 PLNSTQTCIPRLPDRRYCIDEPCQVGMKCFDNVTSNAYTCYTKLDGTAGECLGIK 358


>AC084153-7|AAK84593.1|  451|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.4 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 213 PEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPN 311
           PE E  +RT G+   G++D+N  +   + A+PN
Sbjct: 64  PEFEVEIRTNGHIYAGILDINGAEPGDKGAEPN 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,713,247
Number of Sequences: 27780
Number of extensions: 226338
Number of successful extensions: 440
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)