Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_M03
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1201 - 11419851-11419913,11420090-11420311                       31   1.5  
01_05_0361 + 21377080-21377281,21378619-21378705,21379862-213801...    31   1.5  

>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
 Frame = +3

Query: 537 LRPPXEHXKNRXSSXXWRN--PTGL*RYXAFPPGXLPRALSCSDPAXYRXP 683
           L PP            WR+  PTG   + +FP G LP A     PA  R P
Sbjct: 13  LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQP 63


>01_05_0361 +
           21377080-21377281,21378619-21378705,21379862-21380134,
           21380304-21380378,21380470-21380550,21380837-21381034,
           21381145-21381234,21381310-21381467,21381619-21381741,
           21381891-21382034,21382175-21382285,21382583-21382624,
           21383043-21383261,21385319-21385627
          Length = 703

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -2

Query: 664 GSEQESARGSXPGGNAWYLYXPVGXRHXXLE 572
           GSE+   RGS PG   W +  P G R   LE
Sbjct: 27  GSERGGGRGSSPGFAKWTVQEPAGERFDWLE 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,876,991
Number of Sequences: 37544
Number of extensions: 153388
Number of successful extensions: 237
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)