Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_L23
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 98 1e-21
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 98 1e-21
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 29 0.87
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 29 0.87
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 29 0.87
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 29 0.87
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 29 1.2
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 2.7
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 27 2.7
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 4.7
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 6.1
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 26 6.1
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 26 6.1
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 26 8.1
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 8.1
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 98.3 bits (234), Expect = 1e-21
Identities = 47/71 (66%), Positives = 53/71 (74%)
Frame = +2
Query: 149 RGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLXKELRKG 328
R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYL K K
Sbjct: 24 RAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKD 83
Query: 329 SVPYPHETSPF 361
S PF
Sbjct: 84 SFHLRVRAHPF 94
Score = 95.9 bits (228), Expect = 7e-21
Identities = 43/81 (53%), Positives = 58/81 (71%)
Frame = +1
Query: 457 VARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLR 636
VARV IGQ +MSVR+ D +A IEALRR ++KFPG+Q+I VSKKWGF++Y RDE+ + R
Sbjct: 126 VARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKR 185
Query: 637 EEGRLANDGCIVQYRPEHGPL 699
G + DGC ++ + G L
Sbjct: 186 SRGEIIPDGCYAKFLNKRGSL 206
Score = 87.8 bits (208), Expect = 2e-18
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = +3
Query: 321 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 452
GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G
Sbjct: 81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNG 124
Score = 53.2 bits (122), Expect = 5e-08
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = +1
Query: 79 MGRRPARCYRYCKNKPYPKSRF 144
M RRPARCYRYCKNKPYPKSR+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRY 22
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 98.3 bits (234), Expect = 1e-21
Identities = 47/71 (66%), Positives = 53/71 (74%)
Frame = +2
Query: 149 RGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLXKELRKG 328
R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYL K K
Sbjct: 24 RAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKD 83
Query: 329 SVPYPHETSPF 361
S PF
Sbjct: 84 SFHLRVRAHPF 94
Score = 95.5 bits (227), Expect = 9e-21
Identities = 43/81 (53%), Positives = 58/81 (71%)
Frame = +1
Query: 457 VARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLR 636
VARV IGQ +MSVR+ D +A IEALRR ++KFPG+Q+I VSKKWGF++Y RDE+ + R
Sbjct: 126 VARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKR 185
Query: 637 EEGRLANDGCIVQYRPEHGPL 699
G + DGC ++ + G L
Sbjct: 186 SRGEIIPDGCYAKFLNKRGSL 206
Score = 87.8 bits (208), Expect = 2e-18
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = +3
Query: 321 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 452
GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G
Sbjct: 81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNG 124
Score = 53.2 bits (122), Expect = 5e-08
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = +1
Query: 79 MGRRPARCYRYCKNKPYPKSRF 144
M RRPARCYRYCKNKPYPKSR+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRY 22
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 29.1 bits (62), Expect = 0.87
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 654 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 520
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 29.1 bits (62), Expect = 0.87
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 654 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 520
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 29.1 bits (62), Expect = 0.87
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 654 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 520
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 235 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 279
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 29.1 bits (62), Expect = 0.87
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 654 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 520
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 28.7 bits (61), Expect = 1.2
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = -2
Query: 260 SAVHIRRTP---SARTVESRQRSLSSYPNRRYGSWDQVHPDKNLDFGYGLFLQYR*HLAG 90
S VH TP SAR ES ++ L+ P+ S P + G F Q HLA
Sbjct: 898 SKVHTLETPKVISARPAESVKQPLTPVPSMTSQSAQSYIPPRRQQQQKGFFAQINDHLAQ 957
Query: 89 RRPMV 75
R M+
Sbjct: 958 RGNML 962
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 161 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 280
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 460 ARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSK 588
AR+ IG+ + + K AL++A F PG+ +I V +
Sbjct: 139 ARIPIGRVLFEIGGDGMRKELAEHALKQAAFHLPGKYEIIVKQ 181
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 167 KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAG 283
KI + +KRA +D LC+ +S + E ++ +LE+G
Sbjct: 56 KISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESG 94
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 195 RERPLTTFHCACTWCPTNMNS 257
R RP +T H +CT+C + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 494 CALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAAS 652
C L+T C + + SP+++RS Y +G++ S + + RAA+
Sbjct: 17 CLLITLSIILLGWQCVLLYNHSPEIQRSVYTLTGLAPSSKMAFVTMLTVRAAN 69
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 6.1
Identities = 19/75 (25%), Positives = 31/75 (41%)
Frame = +2
Query: 494 CALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASLMTAALC 673
C + T R S RLC D++ +Y S + NV+++ C K L + +
Sbjct: 160 CLIATAYRSSSIRLC--------DMQSGSYTHSLSGHTGNVLAVDWCPKNEFVLASGSAD 211
Query: 674 STARNMDLSTLGGRF 718
T R D+ + F
Sbjct: 212 GTCRLWDIRKVSSSF 226
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +3
Query: 135 IEVLVGVYLIPRSVSSIWVR---RERPLTTFHCA 227
I VL V L+P SV++ WV+ +E P FH +
Sbjct: 251 ILVLNKVDLVPTSVAAAWVKILAKEYPTIAFHAS 284
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 8.1
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +2
Query: 182 DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLXKELRK 325
++ KKRA DD + +VS EYE L SS+ ++ N KY+ K ++K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,294,206
Number of Sequences: 5004
Number of extensions: 69144
Number of successful extensions: 229
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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