Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_L20
         (877 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0166 + 1412918-1413309,1413845-1414006,1414534-1414720,141...    29   4.9  

>01_01_0166 +
           1412918-1413309,1413845-1414006,1414534-1414720,
           1415221-1415646,1416028-1416036,1416361-1416768,
           1417397-1417654
          Length = 613

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 580 RRLVFCDQIPSRPYXRLRCGXSYQDPTHRSPXLSFQICLR 461
           +R++ CD  P+RP+  + CG  +    +  P   F+  +R
Sbjct: 146 KRVLSCDFKPTRPFRIVTCGEDFLANYYEGPPFKFKHSIR 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,846,761
Number of Sequences: 37544
Number of extensions: 174349
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)