Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_L18
(928 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.100
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.30
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.93
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 5.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 6.6
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.100
Identities = 19/73 (26%), Positives = 21/73 (28%), Gaps = 5/73 (6%)
Frame = +3
Query: 699 PPPPXXXXVGXXXFXKXXPPPPPPQXXKTXXXPXXXXXGAPXPXXXPPXXP-----XXXX 863
PPP K PPPPPP + P + PP P
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIP 352
Query: 864 XPXXXXXXPPPXP 902
P PPP P
Sbjct: 353 LPPQGRSAPPPPP 365
Score = 29.9 bits (64), Expect = 0.53
Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 6/58 (10%)
Frame = +3
Query: 696 PPPPPXXXXVGXXXFX---KXXPPPPPPQXXKT---XXXPXXXXXGAPXPXXXPPXXP 851
PPPPP G + PPPPPP+ + P P PP P
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/66 (25%), Positives = 17/66 (25%)
Frame = +1
Query: 700 PPXPXGXXLGGXXXPKXXPPPPPXXXXKXKXXPXXXXXXPPXPXPPPXXXXXXPXXPXXP 879
PP P L P P PP P P P P P P P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Query: 880 XPXXXP 897
P P
Sbjct: 475 APPPAP 480
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/64 (26%), Positives = 19/64 (29%), Gaps = 6/64 (9%)
Frame = +3
Query: 696 PPPPPXXXXVGXXXFXKXX------PPPPPPQXXKTXXXPXXXXXGAPXPXXXPPXXPXX 857
PPPPP G PPPPPP+ P + P P P
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST 372
Query: 858 XXXP 869
P
Sbjct: 373 GRQP 376
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/50 (30%), Positives = 16/50 (32%)
Frame = +3
Query: 753 PPPPPPQXXKTXXXPXXXXXGAPXPXXXPPXXPXXXXXPXXXXXXPPPXP 902
PP PP + P GAP PP P P PP P
Sbjct: 424 PPSAPPSLPPSA--PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/53 (28%), Positives = 16/53 (30%), Gaps = 5/53 (9%)
Frame = +1
Query: 697 PPPXPXGXXLGGXXXPKXXP-----PPPPXXXXKXKXXPXXXXXXPPXPXPPP 840
PP P +G P P PP P P PP P P P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.30
Identities = 15/50 (30%), Positives = 15/50 (30%)
Frame = +3
Query: 753 PPPPPPQXXKTXXXPXXXXXGAPXPXXXPPXXPXXXXXPXXXXXXPPPXP 902
PPPPPP P P P P P PPP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 30.3 bits (65), Expect = 0.40
Identities = 20/73 (27%), Positives = 21/73 (28%)
Frame = +1
Query: 679 PPXXXXPPPXPXGXXLGGXXXPKXXPPPPPXXXXKXKXXPXXXXXXPPXPXPPPXXXXXX 858
PP P P P + PPPPP P PP P PPP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP-------PGVAGAGPPPPPPPPPAVSAG 788
Query: 859 PXXPXXPXPXXXP 897
P P P
Sbjct: 789 GSRYYAPAPQAEP 801
Score = 30.3 bits (65), Expect = 0.40
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = +3
Query: 678 PPXXXXPPPPPXXXXVGXXXFXKXXPPPPPPQXXKTXXXPXXXXXGAPXPXXXPP 842
PP P P P V PPPPPP P G P P PP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP-------PPGVAGAGPPPPPPPPP 783
Score = 29.9 bits (64), Expect = 0.53
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 7/54 (12%)
Frame = +1
Query: 745 KXXPPPPPXXXXKXKXX-------PXXXXXXPPXPXPPPXXXXXXPXXPXXPXP 885
K PPPPP P PP P PPP P P P P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/52 (28%), Positives = 15/52 (28%)
Frame = +3
Query: 696 PPPPPXXXXVGXXXFXKXXPPPPPPQXXKTXXXPXXXXXGAPXPXXXPPXXP 851
PPPPP V PPP P P P PP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.1 bits (62), Expect = 0.93
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +1
Query: 679 PPXXXXPPPXPXGXXLGGXXXPKXXPPPPPXXXXKXK 789
PP PPP P G P PPPPP K +
Sbjct: 5 PPGNPPPPPPPPGFE-----PPSQPPPPPPPGYVKKR 36
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +3
Query: 678 PPXXXXPPPPPXXXXVGXXXFXKXXPPPPP 767
PP PPPPP G + PPPPP
Sbjct: 5 PPGNPPPPPPPP----GFEPPSQPPPPPPP 30
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 2.8
Identities = 29/109 (26%), Positives = 29/109 (26%)
Frame = -2
Query: 822 GGXXXXXXXXXFXFXXXXGGGGGXXFWXXXXXQPXPXXXGGGXXXXGGGXXXKXXXXGGG 643
GG F GGG G P P GG G G GG
Sbjct: 169 GGLASHALGNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGG 228
Query: 642 XPPGXVGRXXXXXPPXXGXXKXXXPPPXXXXXGXXGXFXGGXXGGXGXP 496
P G G P G G G F GG GG G P
Sbjct: 229 GPGGFEG-----GPGGFGGGPGGFGGGLGGFGGGPGGF-GGGPGGHGGP 271
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/57 (26%), Positives = 15/57 (26%)
Frame = +3
Query: 681 PXXXXPPPPPXXXXVGXXXFXKXXPPPPPPQXXKTXXXPXXXXXGAPXPXXXPPXXP 851
P PP PP PP PPP P P P P P
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/69 (23%), Positives = 16/69 (23%)
Frame = +1
Query: 679 PPXXXXPPPXPXGXXLGGXXXPKXXPPPPPXXXXKXKXXPXXXXXXPPXPXPPPXXXXXX 858
P PP P P PP P P PP P P
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPK 1202
Query: 859 PXXPXXPXP 885
P P P
Sbjct: 1203 PSVGVPPVP 1211
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +1
Query: 754 PPPPPXXXXKXKXXPXXXXXXPPXPXPPPXXXXXXPXXP 870
PPPPP P PP PPP P P
Sbjct: 1707 PPPPPMSVPPPPSAP-PMPAGPPSAPPPPLPASSAPSVP 1744
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,743,398
Number of Sequences: 5004
Number of extensions: 22935
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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