Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_L17
         (1003 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.59 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.59 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.4  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   2.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.2  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
 Frame = +1

Query: 637  PPXXXPXPGXPXTXPPXXA------SFSXFXXPPPAPAXPXPXPS 753
            PP   P  G P   PP  A      S      PPP+ A P P PS
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPS 1223


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 916 PXPXSPAXGGAXPPPXPPXRP 978
           P P  P   GA PPP PP  P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.1 bits (62), Expect = 1.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 904 APXXPXPXSPAXGGAXPPPXPP 969
           AP    P +P  GG  PPP PP
Sbjct: 747 APIPVPPPAPIMGGPPPPPPPP 768



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 316 GPPPPXXGPXXGGAXPXLPXP 378
           GPPPP   P   GA P  P P
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 907 PXXPXPXSPAXGGAXPPPXPP 969
           P  P P   A  G  PPP PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -1

Query: 550 GXGGXPXGGGXGXXXGGGGXGG 485
           G GG P G G G    GGG GG
Sbjct: 239 GFGGGPGGFGGGLGGFGGGPGG 260


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = +1

Query: 637 PPXXXPXPGXPXTXPPXXASFSXFXXPPPAPAXPXPXP 750
           PP     P  P + PP     +    PP AP+ P   P
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVP 195


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
 Frame = +1

Query: 637  PPXXXPXPGXPXTXPPXXASFSXFXXP-PPAPAXP 738
            P    P      T PP  +SF+    P PPAP  P
Sbjct: 1506 PSSVAPATAPSSTLPPSQSSFAHVPSPAPPAPQHP 1540


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 18/59 (30%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
 Frame = -2

Query: 420 PPPPPPXXXKXXXPWXG---QXGXCPPXXGPXXRRXXPXXPXETPXXPPXGGXGXPRPP 253
           PPPPPP       P  G        PP   P         P      PP G    P PP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIP-----LPPQGRSAPPPPP 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.148    0.535 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,284,430
Number of Sequences: 5004
Number of extensions: 14926
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 519268360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)