Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_L15
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...   120   3e-28
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...   119   6e-28
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    33   0.040
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    32   0.092
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.49 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.5  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    27   2.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.1  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score =  120 bits (289), Expect = 3e-28
 Identities = 52/82 (63%), Positives = 59/82 (71%)
 Frame = +1

Query: 82  EGXSSFGKRRNKXHTLCXXCGXSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRXXXTGTG 261
           +G  SFG R NK HT+C  CG  S+HIQKS CA CGYPAAK RSY+W  KAKR   TGTG
Sbjct: 3   KGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTG 62

Query: 262 RMRHLKIVRXRFRNGFKEGKPT 327
           RM +LK V   F+NGF+ GKPT
Sbjct: 63  RMSYLKKVHRSFKNGFRAGKPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score =  119 bits (286), Expect = 6e-28
 Identities = 53/89 (59%), Positives = 60/89 (67%)
 Frame = +1

Query: 82  EGXSSFGKRRNKXHTLCXXCGXSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRXXXTGTG 261
           +G  SFG R NK HT+C  CG  S+HIQKS CA CGYPAAK RSY+W  KAKR   TGTG
Sbjct: 3   KGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTG 62

Query: 262 RMRHLKIVRXRFRNGFKEGKPTPPKKAVA 348
           RM +LK V   F+NGF+ GKP     A A
Sbjct: 63  RMSYLKKVHRSFKNGFRSGKPAAAVAASA 91


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 33.5 bits (73), Expect = 0.040
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +1

Query: 757  SXSPPXXPAPGXXXXPTXSPPPXRXPVXPPSGXPPXP 867
            S + P  PAP     P   P     PV PPS  PP P
Sbjct: 1165 SVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVP 1201



 Score = 32.3 bits (70), Expect = 0.092
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +1

Query: 763  SPPXXPAPGXXXXPTXSPPPXRXPVXPPSGXPPXP 867
            +PP  PAP     P+   P    PV  PSG PP P
Sbjct: 1062 APPPVPAPSSEI-PSIPAPSGAPPVPAPSGIPPVP 1095



 Score = 29.9 bits (64), Expect = 0.49
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +1

Query: 769  PXXPAPGXXXXPTXSPPPXRXPVXPPSGXPPXP 867
            P  P P     P   P     PV  PSG PP P
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVP 1124



 Score = 29.1 bits (62), Expect = 0.86
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +1

Query: 757  SXSPPXXPAPGXXXXPTXSPPPXRXPVXPPSGXPPXP 867
            S + P  PAP     P   P     PV  PSG PP P
Sbjct: 1108 SVAVPPVPAPSGAP-PVPKPSVAAPPVPVPSGAPPVP 1143



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +1

Query: 757  SXSPPXXPAPGXXXXPTXSPPPXRXPVXPPSGXPPXP 867
            S + P  P P     P   P     PV  PSG PP P
Sbjct: 1127 SVAAPPVPVPSGAP-PVPKPSVAAPPVPAPSGAPPVP 1162



 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +1

Query: 769  PXXPAPGXXXXPTXSPPPXRXPVXPPSGXPPXP 867
            P  P P     P   P     PV PPS  PP P
Sbjct: 1189 PPVPPPSEAP-PVPKPSVGVPPVPPPSTAPPVP 1220



 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = +1

Query: 757  SXSPPXXPAPGXXXXPTXSPPPXRXPVXPPS-GXPPXP 867
            S +PP  P P     P   PP    PV  PS G PP P
Sbjct: 1195 SEAPPV-PKPSVGVPPVP-PPSTAPPVPTPSAGLPPVP 1230


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 32.3 bits (70), Expect = 0.092
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
 Frame = +1

Query: 724 PGHRXXGIGXXSXSPPXXPAP----GXXXXPTXSPPPXRXPVXPPSGXPPXP 867
           P  R  G    S +PP  PAP         PT +PP    P   P+  PP P
Sbjct: 110 PKLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIP 161


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
 Frame = +1

Query: 757  SXSPPXXPAPGXXXXPTXSPPPXRXPVXP--PSGXPPXP 867
            S +PP   AP     P   PPP   P  P  P   PP P
Sbjct: 1696 SAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +1

Query: 766 PPXXPAPGXXXXPTXSPPPXRXPVXPPSGXPPXP 867
           P   PAP     P   PPP      PP   PP P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +1

Query: 763 SPPXXPAPGXXXXPTXSPPPXRXPVXPPSGXPPXP 867
           SPP  P       P  +P P   P     G PP P
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/43 (30%), Positives = 15/43 (34%)
 Frame = +1

Query: 730 HRXXGIGXXSXSPPXXPAPGXXXXPTXSPPPXRXPVXPPSGXP 858
           HR       S  P   P+P     P+  PP    P   P G P
Sbjct: 345 HRSRSPSPRSGRPRRSPSPSHLSIPSTLPPADGVPKPTPDGFP 387


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +2

Query: 758 PXLPPXXLPPXXXXXPPXPLPXGGIRXPPXP 850
           P LPP   PP      P  LP G    PP P
Sbjct: 421 PSLPPSA-PPSLPPSAPPSLPMGAPAAPPLP 450



 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 764 LPPXXLPPXXXXXPPXPLPXGGIRXPPXP 850
           LPP   PP        PLP  G   PP P
Sbjct: 336 LPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,160,517
Number of Sequences: 5004
Number of extensions: 29079
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)