Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_L14
         (882 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   332   3e-93
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   321   6e-90
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   281   5e-78
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   248   4e-68
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    34   0.002
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   4.9  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  332 bits (815), Expect = 3e-93
 Identities = 163/214 (76%), Positives = 167/214 (78%)
 Frame = +1

Query: 139 LHXVVIGPVXSGXSXPXGXLXSKCGGXAXRXXEXFXXAAQXMGKGSFKYAWVLDKLKAER 318
           ++ VVIG V SG S   G L  KCGG   R  E F   AQ MGKGSFKYAWVLDKLKAER
Sbjct: 8   INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 67

Query: 319 ERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 498
           ERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI
Sbjct: 68  ERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 127

Query: 499 SKNGQXREHALLAFTLGVXQLIVGVNKMDSTEXXYSEPRFEEXXXXXXXXXXXXGYNPXX 678
           SKNGQ REHALLAFTLGV QLIVGVNKMDSTE  YSE RFEE            GYNP  
Sbjct: 128 SKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAA 187

Query: 679 VXFVPISGWXGEXMLEPXTKMPWXKGWXVXRKEG 780
           V FVPISGW G+ MLE  +KMPW KGW V RKEG
Sbjct: 188 VAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEG 221


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  321 bits (788), Expect = 6e-90
 Identities = 157/214 (73%), Positives = 163/214 (76%)
 Frame = +1

Query: 139 LHXVVIGPVXSGXSXPXGXLXSKCGGXAXRXXEXFXXAAQXMGKGSFKYAWVLDKLKAER 318
           ++ VVIG V SG S   G L  KCGG   R  E F   AQ MGKGSFKYAWVLDKLKAER
Sbjct: 8   INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 67

Query: 319 ERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 498
           ERGITIDIALWKFET+KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG GEFEAGI
Sbjct: 68  ERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGIGEFEAGI 127

Query: 499 SKNGQXREHALLAFTLGVXQLIVGVNKMDSTEXXYSEPRFEEXXXXXXXXXXXXGYNPXX 678
           SKNGQ REHALLAFTLGV QLIVGVNKMD T+  YSE RFEE            GYN   
Sbjct: 128 SKNGQTREHALLAFTLGVKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYNTAS 187

Query: 679 VXFVPISGWXGEXMLEPXTKMPWXKGWXVXRKEG 780
           V FVPISGW G+ MLEP  K PW KGW V RK+G
Sbjct: 188 VAFVPISGWHGDNMLEPSPKTPWYKGWKVERKDG 221


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  281 bits (690), Expect = 5e-78
 Identities = 135/164 (82%), Positives = 137/164 (83%)
 Frame = +1

Query: 289 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 468
           WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 469 AGTGEFEAGISKNGQXREHALLAFTLGVXQLIVGVNKMDSTEXXYSEPRFEEXXXXXXXX 648
           AGTGEFEAGISKNGQ REHALLAFTLGV QLIVGVNKMDSTE  YSE RFEE        
Sbjct: 61  AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSY 120

Query: 649 XXXXGYNPXXVXFVPISGWXGEXMLEPXTKMPWXKGWXVXRKEG 780
               GYNP  V FVPISGW G+ MLE  +KMPW KGW V RKEG
Sbjct: 121 IKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEG 164


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  248 bits (608), Expect = 4e-68
 Identities = 119/148 (80%), Positives = 121/148 (81%)
 Frame = +1

Query: 337 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQX 516
           DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 60

Query: 517 REHALLAFTLGVXQLIVGVNKMDSTEXXYSEPRFEEXXXXXXXXXXXXGYNPXXVXFVPI 696
           REHALLAFTLGV QLIVGVNKMDSTE  YSE RFEE            GYNP  V FVPI
Sbjct: 61  REHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPI 120

Query: 697 SGWXGEXMLEPXTKMPWXKGWXVXRKEG 780
           SGW G+ MLE  +KMPW KGW V RKEG
Sbjct: 121 SGWHGDNMLEVSSKMPWFKGWTVERKEG 148


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 33.9 bits (74), Expect = 0.002
 Identities = 23/82 (28%), Positives = 35/82 (42%)
 Frame = +1

Query: 376 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQXREHALLAFTLGVX 555
           VT +D PGH  FI     G    D  VL+VAA  G  E  +      ++  +        
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKEQTLQSIEMAKDAKV-------- 246

Query: 556 QLIVGVNKMDSTEXXYSEPRFE 621
            +IV +NK+D       + ++E
Sbjct: 247 PIIVAINKIDKPNIDIIKVQYE 268


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 361 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 462
           T KYY    D P +  FIKN+   ++ +D   LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 361 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 462
           T KYY    D P +  FIKN+   ++ +D   L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,673
Number of Sequences: 438
Number of extensions: 2560
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)