Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_L11
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0422 + 33818887-33819996                                         31   1.2  
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678...    30   2.2  
07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462     29   6.6  
11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659,539...    28   8.7  

>03_06_0422 + 33818887-33819996
          Length = 369

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = -3

Query: 540 ESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDXSNTSSGTS 370
           E   ++ER  + E+T SL    + N   E ++L+G       D+  +D SNTSSG S
Sbjct: 156 ERMRERERERRRERTESLILINSNN---EAIILQGT---FGPDDNQDDSSNTSSGVS 206


>03_02_0994 -
           13067254-13067379,13067483-13067521,13067824-13067893,
           13068025-13068116,13068237-13068319,13068590-13068633,
           13068682-13068800,13068883-13068915,13069152-13069239,
           13069364-13069413
          Length = 247

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 153 VCRQXDRPCSQVCHLLQLCTGAXXCSSTXPYTDGTCCPYTALC 281
           VC   ++P +QVC+   +C G   CS+   + D   C    LC
Sbjct: 51  VC-DTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVRCRCCLLC 92


>07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462
          Length = 106

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 153 VCRQXDRPCSQVCHLLQLCTGAXXCSSTXPYTDG 254
           +CRQ +  C   CH++ LC G    S   P T G
Sbjct: 38  ICRQVEAGCFAHCHIV-LCKGEPSRSPFRPVTSG 70


>11_01_0662 -
           5389746-5390548,5390727-5391368,5391624-5391659,
           5392314-5392377
          Length = 514

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 549 NSLESEEQQERHHKTEQTHSLRQ 481
           NS+   E QE+ H  E+TH LRQ
Sbjct: 62  NSIFYSESQEQKHVKEETHRLRQ 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,931,981
Number of Sequences: 37544
Number of extensions: 339935
Number of successful extensions: 783
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)