Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_L11
(893 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase su... 66 3e-11
D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase su... 66 3e-11
AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical... 66 3e-11
Z71181-2|CAA94895.1| 301|Caenorhabditis elegans Hypothetical pr... 29 3.4
AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical ... 29 4.5
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr... 29 5.9
AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical ... 29 5.9
AC006632-1|AAK85466.1| 311|Caenorhabditis elegans Hypothetical ... 29 5.9
Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical p... 28 7.8
>D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 66.1 bits (154), Expect = 3e-11
Identities = 36/70 (51%), Positives = 38/70 (54%)
Frame = +1
Query: 280 AVRSFQTTSVTKXXDSXXXXXXXXXXXXXXXXXXXXXXTVFGSLIIGYARNPSLKQQLFS 459
A R TT K DS VFG+L+IGYARNPSLKQQLFS
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65
Query: 460 YAILGFALSE 489
YAILGFALSE
Sbjct: 66 YAILGFALSE 75
>D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 66.1 bits (154), Expect = 3e-11
Identities = 36/70 (51%), Positives = 38/70 (54%)
Frame = +1
Query: 280 AVRSFQTTSVTKXXDSXXXXXXXXXXXXXXXXXXXXXXTVFGSLIIGYARNPSLKQQLFS 459
A R TT K DS VFG+L+IGYARNPSLKQQLFS
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65
Query: 460 YAILGFALSE 489
YAILGFALSE
Sbjct: 66 YAILGFALSE 75
>AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical
protein Y82E9BR.3 protein.
Length = 116
Score = 66.1 bits (154), Expect = 3e-11
Identities = 36/70 (51%), Positives = 38/70 (54%)
Frame = +1
Query: 280 AVRSFQTTSVTKXXDSXXXXXXXXXXXXXXXXXXXXXXTVFGSLIIGYARNPSLKQQLFS 459
A R TT K DS VFG+L+IGYARNPSLKQQLFS
Sbjct: 30 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 89
Query: 460 YAILGFALSE 489
YAILGFALSE
Sbjct: 90 YAILGFALSE 99
>Z71181-2|CAA94895.1| 301|Caenorhabditis elegans Hypothetical
protein K07C5.2 protein.
Length = 301
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +2
Query: 26 PYXVRPSLKTFCCLXNXTFQRPVSLLLG 109
PY RP+LK FC L N Q SL G
Sbjct: 189 PYLTRPTLKKFCDLNNIVVQSYSSLCWG 216
>AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical
protein Y48G1BM.5 protein.
Length = 994
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = -3
Query: 192 GRPGCRGDQXGGRQHFVFIRCGARQQRTPRRRETGLWXVQLXRQQKVLREGRT 34
G PG G R+ RCGAR + R+ LW +Q + R T
Sbjct: 548 GSPGSVDPIRGSRRSVRQDRCGARSDQQDLPRDGSLWRIQCSHATTIRRATST 600
>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
protein E01G6.1 protein.
Length = 1391
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = +3
Query: 207 CTGAXXCSSTXPYTDGTCCPYTALCSAVLP 296
C+ C + D CCPY + C A P
Sbjct: 189 CSATKPCPNGFSCNDKKCCPYASACPAGAP 218
>AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical
protein Y45F3A.8 protein.
Length = 404
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = -3
Query: 327 RVXXLSDRCGLEGPHCR---ELCRDSRYHLCMGGYCCKXXHQC 208
RV ++ C P CR +LC SRY M YC K C
Sbjct: 321 RVEEGTEDCEDMTPDCRNYRDLCEHSRYKTLMENYCPKACGHC 363
>AC006632-1|AAK85466.1| 311|Caenorhabditis elegans Hypothetical
protein F28A10.1 protein.
Length = 311
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -1
Query: 533 KSSRNAIIRQNRPIASDKAKPRMAYENNCCLREGFLA*PMMRE 405
KSSR I ++ I KP E N C+ + FLA PM E
Sbjct: 21 KSSRTLIQPKSSKIQLKSFKPTFFEEWNSCVAQKFLAIPMTAE 63
>Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical
protein C54D10.6 protein.
Length = 348
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 577 PTYEVSVYTIWSGXPWNRMFGNLTLIVIQ 663
P + VSVY I PWN +F ++V Q
Sbjct: 29 PLFLVSVYCILKKSPWNMVFYKWLILVFQ 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,771,939
Number of Sequences: 27780
Number of extensions: 282176
Number of successful extensions: 746
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -