Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_L08
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    72   1e-13
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    70   4e-13

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 71.7 bits (168), Expect = 1e-13
 Identities = 34/78 (43%), Positives = 50/78 (64%)
 Frame = +3

Query: 168 WSKGXVRAKLXXXVLFDKPTXXXLYKXVPQYKLITPAVVSEXLKVRGSLAXXALIELREK 347
           WSKG V+ K     +FDK     + K VP +K I+ +V+ + +K+ GSLA  A+ +L E+
Sbjct: 7   WSKGKVKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAER 66

Query: 348 GLIKQVVQHHGQVIYTRA 401
           G+I++V QH  Q IYTRA
Sbjct: 67  GVIQKVDQHSKQAIYTRA 84


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 70.1 bits (164), Expect = 4e-13
 Identities = 33/77 (42%), Positives = 49/77 (63%)
 Frame = +3

Query: 168 WSKGXVRAKLXXXVLFDKPTXXXLYKXVPQYKLITPAVVSEXLKVRGSLAXXALIELREK 347
           WSKG V+ K     +FDK     + K VP +K I+ +V+ + +K+ GSLA  A+ +L E+
Sbjct: 7   WSKGKVKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAER 66

Query: 348 GLIKQVVQHHGQVIYTR 398
           G+I++V QH  Q IYTR
Sbjct: 67  GVIQKVDQHSKQAIYTR 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,902,157
Number of Sequences: 5004
Number of extensions: 23876
Number of successful extensions: 35
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)