Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_L08
         (898 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M64716-1|AAA16105.1|  125|Homo sapiens ribosomal protein protein.     106   9e-23
BC004986-1|AAH04986.1|  125|Homo sapiens ribosomal protein S25 p...   106   9e-23
BC004294-1|AAH04294.1|  125|Homo sapiens ribosomal protein S25 p...   106   9e-23
BC003537-1|AAH03537.1|  125|Homo sapiens ribosomal protein S25 p...   106   9e-23
AB061844-1|BAB79482.1|  125|Homo sapiens ribosomal protein S25 p...   106   9e-23

>M64716-1|AAA16105.1|  125|Homo sapiens ribosomal protein protein.
          Length = 125

 Score =  106 bits (255), Expect = 9e-23
 Identities = 57/86 (66%), Positives = 59/86 (68%)
 Frame = +3

Query: 168 WSKGXVRAKLXXXVLFDKPTXXXLYKXVPQYKLITPAVVSEXLKVRGSLAXXALIELREK 347
           WSKG VR KL   VLFDK T   L K VP YKLITPAVVSE LK+RGSLA  AL EL  K
Sbjct: 35  WSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSK 94

Query: 348 GLIKQVVQHHGQVIYTRAXKGDDPVA 425
           GLIK V +H  QVIYTR  KG D  A
Sbjct: 95  GLIKLVSKHRAQVIYTRNTKGGDAPA 120


>BC004986-1|AAH04986.1|  125|Homo sapiens ribosomal protein S25
           protein.
          Length = 125

 Score =  106 bits (255), Expect = 9e-23
 Identities = 57/86 (66%), Positives = 59/86 (68%)
 Frame = +3

Query: 168 WSKGXVRAKLXXXVLFDKPTXXXLYKXVPQYKLITPAVVSEXLKVRGSLAXXALIELREK 347
           WSKG VR KL   VLFDK T   L K VP YKLITPAVVSE LK+RGSLA  AL EL  K
Sbjct: 35  WSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSK 94

Query: 348 GLIKQVVQHHGQVIYTRAXKGDDPVA 425
           GLIK V +H  QVIYTR  KG D  A
Sbjct: 95  GLIKLVSKHRAQVIYTRNTKGGDAPA 120


>BC004294-1|AAH04294.1|  125|Homo sapiens ribosomal protein S25
           protein.
          Length = 125

 Score =  106 bits (255), Expect = 9e-23
 Identities = 57/86 (66%), Positives = 59/86 (68%)
 Frame = +3

Query: 168 WSKGXVRAKLXXXVLFDKPTXXXLYKXVPQYKLITPAVVSEXLKVRGSLAXXALIELREK 347
           WSKG VR KL   VLFDK T   L K VP YKLITPAVVSE LK+RGSLA  AL EL  K
Sbjct: 35  WSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSK 94

Query: 348 GLIKQVVQHHGQVIYTRAXKGDDPVA 425
           GLIK V +H  QVIYTR  KG D  A
Sbjct: 95  GLIKLVSKHRAQVIYTRNTKGGDAPA 120


>BC003537-1|AAH03537.1|  125|Homo sapiens ribosomal protein S25
           protein.
          Length = 125

 Score =  106 bits (255), Expect = 9e-23
 Identities = 57/86 (66%), Positives = 59/86 (68%)
 Frame = +3

Query: 168 WSKGXVRAKLXXXVLFDKPTXXXLYKXVPQYKLITPAVVSEXLKVRGSLAXXALIELREK 347
           WSKG VR KL   VLFDK T   L K VP YKLITPAVVSE LK+RGSLA  AL EL  K
Sbjct: 35  WSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSK 94

Query: 348 GLIKQVVQHHGQVIYTRAXKGDDPVA 425
           GLIK V +H  QVIYTR  KG D  A
Sbjct: 95  GLIKLVSKHRAQVIYTRNTKGGDAPA 120


>AB061844-1|BAB79482.1|  125|Homo sapiens ribosomal protein S25
           protein.
          Length = 125

 Score =  106 bits (255), Expect = 9e-23
 Identities = 57/86 (66%), Positives = 59/86 (68%)
 Frame = +3

Query: 168 WSKGXVRAKLXXXVLFDKPTXXXLYKXVPQYKLITPAVVSEXLKVRGSLAXXALIELREK 347
           WSKG VR KL   VLFDK T   L K VP YKLITPAVVSE LK+RGSLA  AL EL  K
Sbjct: 35  WSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSK 94

Query: 348 GLIKQVVQHHGQVIYTRAXKGDDPVA 425
           GLIK V +H  QVIYTR  KG D  A
Sbjct: 95  GLIKLVSKHRAQVIYTRNTKGGDAPA 120


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,290,684
Number of Sequences: 237096
Number of extensions: 1108673
Number of successful extensions: 1085
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11548247776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)