Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_L07
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    28   2.0  
SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   4.5  
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    26   7.9  

>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 166 IXPHWDAAFRVPKRTKNTKXKRDGATNSXATCFRXVECKAKLKEGP 29
           I P W    RVP+   ++       +N  +T ++ ++ +A LK+GP
Sbjct: 126 IVPVWGKVQRVPQAKSSSATITPSVSNKLSTAYQSIKSEA-LKDGP 170


>SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 471 EKLPTQQALQAVHDFLACGVEKNLLTE 551
           EKLP   A   ++D + C    +LLTE
Sbjct: 149 EKLPPSSAEDGIYDLVICSFALHLLTE 175


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 117 TPKXRETVQPTALQPVLD 64
           +PK  ETVQ T +QP +D
Sbjct: 246 SPKLLETVQSTIIQPTID 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,811,304
Number of Sequences: 5004
Number of extensions: 52447
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)