Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_L05
         (909 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0712 + 5329016-5329744,5330477-5330521                           30   2.2  
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765...    28   8.9  

>02_01_0712 + 5329016-5329744,5330477-5330521
          Length = 257

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = +3

Query: 177 GGDSPDGEVAPGVDPVKVVDEDHGVNIVDGEPGG 278
           GG+S  GE A  VDP+ VV E+ G +   GEP G
Sbjct: 190 GGESDRGEPAGAVDPLPVVVEEGGWS-GRGEPAG 222


>02_04_0064 -
           19375497-19375580,19375659-19375733,19376359-19376514,
           19377016-19377093,19377328-19377428,19377570-19377717,
           19378172-19378316,19378803-19378906,19380257-19380385,
           19380526-19380636,19380734-19380863,19381915-19382034,
           19382360-19382481,19382965-19383048,19383241-19383357,
           19383442-19383522,19384138-19384197,19384398-19384440,
           19384528-19384626,19385353-19385564,19385964-19386091,
           19386246-19386396
          Length = 825

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 245 MIFIHNFHWINAGGDFAIG 189
           ++F+ NFHW N+  D+ +G
Sbjct: 747 LVFVFNFHWSNSYFDYRVG 765


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,972,541
Number of Sequences: 37544
Number of extensions: 122586
Number of successful extensions: 299
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)