Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_L02
(888 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 109 3e-24
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 106 2e-23
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 42 8e-04
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 42 8e-04
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 40 0.003
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 36 0.051
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 36 0.051
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 34 0.16
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 34 0.16
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 29 4.4
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 29 4.4
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 29 4.4
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 29 5.9
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 29 5.9
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 109 bits (262), Expect = 3e-24
Identities = 63/100 (63%), Positives = 67/100 (67%), Gaps = 8/100 (8%)
Frame = +2
Query: 239 SLVSKXXXXXXXXXXXXRFTDTRKDEQXRCITIKSTXISMFFELEEKDLVFITNPDQXE- 415
SLVSK RFTDTRKDEQ RCITIKST IS+FFELE+KDL F+ +Q E
Sbjct: 38 SLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKSTAISLFFELEKKDLEFVKGENQFET 97
Query: 416 -----KSEK--GFLIXLIDSPGXVDFSSEVXXXLRVTDGA 514
K EK GFLI LIDSPG VDFSSEV LRVTDGA
Sbjct: 98 VEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGA 137
Score = 96.3 bits (229), Expect = 3e-20
Identities = 49/81 (60%), Positives = 52/81 (64%)
Frame = +3
Query: 516 LXVVDCVSGVCVQTEXVLXQAIAEXIKPILFMXKMXRAXXXXXXXXXXXXQXFQXIVXNV 695
L VVDCVSGVCVQTE VL QAIAE IKP+LFM KM RA Q FQ IV N+
Sbjct: 138 LVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLGAEELFQTFQRIVENI 197
Query: 696 XVIIXXYXDDGGPMGEVXVXP 758
VII Y DD GPMG + V P
Sbjct: 198 NVIIATYGDDDGPMGPIMVDP 218
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +1
Query: 181 LRNMSVLAHVDHGKSTLT 234
+RNMSV+AHVDHGKSTLT
Sbjct: 19 IRNMSVIAHVDHGKSTLT 36
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 106 bits (255), Expect = 2e-23
Identities = 62/100 (62%), Positives = 66/100 (66%), Gaps = 8/100 (8%)
Frame = +2
Query: 239 SLVSKXXXXXXXXXXXXRFTDTRKDEQXRCITIKSTXISMFFELEEKDLVFITNPDQXE- 415
SLVSK RFTDTRKDEQ RCITIKST IS+FFELE+KDL F+ +Q E
Sbjct: 38 SLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKSTAISLFFELEKKDLEFVKGENQFET 97
Query: 416 -----KSEK--GFLIXLIDSPGXVDFSSEVXXXLRVTDGA 514
K EK GFLI LIDSPG VDFSSEV L VTDGA
Sbjct: 98 VEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGA 137
Score = 96.3 bits (229), Expect = 3e-20
Identities = 49/81 (60%), Positives = 52/81 (64%)
Frame = +3
Query: 516 LXVVDCVSGVCVQTEXVLXQAIAEXIKPILFMXKMXRAXXXXXXXXXXXXQXFQXIVXNV 695
L VVDCVSGVCVQTE VL QAIAE IKP+LFM KM RA Q FQ IV N+
Sbjct: 138 LVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLGAEELFQTFQRIVENI 197
Query: 696 XVIIXXYXDDGGPMGEVXVXP 758
VII Y DD GPMG + V P
Sbjct: 198 NVIIATYGDDDGPMGPIMVDP 218
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +1
Query: 181 LRNMSVLAHVDHGKSTLT 234
+RNMSV+AHVDHGKSTLT
Sbjct: 19 IRNMSVIAHVDHGKSTLT 36
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 41.5 bits (93), Expect = 8e-04
Identities = 34/90 (37%), Positives = 42/90 (46%)
Frame = +2
Query: 239 SLVSKXXXXXXXXXXXXRFTDTRKDEQXRCITIKSTXISMFFELEEKDLVFITNPDQXEK 418
SLVS R+ D+R+DEQ R IT+KS+ IS+ E
Sbjct: 39 SLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISLLCE----------------- 81
Query: 419 SEKGFLIXLIDSPGXVDFSSEVXXXLRVTD 508
LI LIDSPG VDFS EV L ++D
Sbjct: 82 ---PLLINLIDSPGHVDFSGEVTSALILSD 108
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 516 LXVVDCVSGVCVQTEXVLXQAIAEXIKPILFMXKMXR 626
L ++D + G+C QTE ++ Q I IL + K+ R
Sbjct: 111 LLLIDVIEGICSQTEALIRQVIRNGQAMILVINKIDR 147
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 41.5 bits (93), Expect = 8e-04
Identities = 34/90 (37%), Positives = 42/90 (46%)
Frame = +2
Query: 239 SLVSKXXXXXXXXXXXXRFTDTRKDEQXRCITIKSTXISMFFELEEKDLVFITNPDQXEK 418
SLVS R+ D+R+DEQ R IT+KS+ IS+ E
Sbjct: 39 SLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISLLCE----------------- 81
Query: 419 SEKGFLIXLIDSPGXVDFSSEVXXXLRVTD 508
LI LIDSPG VDFS EV L ++D
Sbjct: 82 ---PLLINLIDSPGHVDFSGEVTSALILSD 108
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 516 LXVVDCVSGVCVQTEXVLXQAIAEXIKPILFMXKMXR 626
L ++D + G+C QTE ++ Q I IL + K+ R
Sbjct: 111 LLLIDVIEGICSQTEALIRQVIRNGQAMILVINKIDR 147
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +2
Query: 425 KGFLIXLIDSPGXVDFSSEVXXXLRVTDG 511
+G+L+ LID+PG VDFS+EV L V DG
Sbjct: 100 RGYLLNLIDTPGHVDFSAEVSRSLAVCDG 128
Score = 32.7 bits (71), Expect = 0.36
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +1
Query: 181 LRNMSVLAHVDHGKSTL 231
+RN ++AHVDHGKSTL
Sbjct: 42 IRNFGIVAHVDHGKSTL 58
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 35.5 bits (78), Expect = 0.051
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +2
Query: 428 GFLIXLIDSPGXVDFSSEVXXXLRVTDGA 514
G I +ID+PG VDF+ EV LRV DGA
Sbjct: 111 GTNINIIDTPGHVDFTVEVERALRVLDGA 139
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 35.5 bits (78), Expect = 0.051
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = +2
Query: 425 KGFLIXLIDSPGXVDFSSEVXXXLRVTDG 511
KG I LID+PG VDF EV +RV DG
Sbjct: 88 KGHRINLIDTPGHVDFRVEVERCVRVLDG 116
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 181 LRNMSVLAHVDHGKSTLT-XLVGFQGRYH 264
LRN+ V+AHVD GK+T+T L+ G H
Sbjct: 25 LRNIGVIAHVDAGKTTVTERLLYLAGAIH 53
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 33.9 bits (74), Expect = 0.16
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 413 EKSEKGFLIXLIDSPGXVDFSSEVXXXLRVTDG 511
+ K +L+ +ID+PG V+FS E+ R+ DG
Sbjct: 195 DSRSKSYLLNIIDTPGHVNFSDEMTASYRLADG 227
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 33.9 bits (74), Expect = 0.16
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 413 EKSEKGFLIXLIDSPGXVDFSSEVXXXLRVTDG 511
+ K +L+ +ID+PG V+FS E+ R+ DG
Sbjct: 70 DSRSKSYLLNIIDTPGHVNFSDEMTASYRLADG 102
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 187 NMSVLAHVDHGKSTLTXLV 243
N+ + HVDHGK+TLT +
Sbjct: 51 NVGTIGHVDHGKTTLTSAI 69
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 187 NMSVLAHVDHGKSTLTXLV 243
N+ + HVDHGK+TLT +
Sbjct: 52 NVGTIGHVDHGKTTLTSAI 70
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 187 NMSVLAHVDHGKSTLTXLV 243
N+ + HVDHGK+TLT +
Sbjct: 52 NVGTIGHVDHGKTTLTSAI 70
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 28.7 bits (61), Expect = 5.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 187 NMSVLAHVDHGKSTLTXLV 243
N+ + H+DHGK+TLT +
Sbjct: 47 NVGTIGHIDHGKTTLTSAI 65
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 28.7 bits (61), Expect = 5.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 187 NMSVLAHVDHGKSTLTXLV 243
N+ + H+DHGK+TLT +
Sbjct: 47 NVGTIGHIDHGKTTLTSAI 65
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,118,477
Number of Sequences: 27780
Number of extensions: 143233
Number of successful extensions: 352
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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