Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_L02
         (888 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    26   0.53 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    25   0.92 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.92 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.7  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = +1

Query: 190 MSVLAHVDHGKSTL 231
           ++++ HVDHGK+TL
Sbjct: 148 VTIMGHVDHGKTTL 161


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 187 NMSVLAHVDHGKSTLT 234
           N+ V+ HVD GKST T
Sbjct: 9   NIVVIGHVDSGKSTTT 24


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 187 NMSVLAHVDHGKSTLT 234
           N+ V+ HVD GKST T
Sbjct: 9   NIVVIGHVDSGKSTTT 24


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 187 NMSVLAHVDHGKSTLTXLV 243
           N+  + HV HGKST+   +
Sbjct: 44  NIGTIGHVAHGKSTIVKAI 62


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/30 (26%), Positives = 13/30 (43%)
 Frame = +1

Query: 496 PCH*WSPXWLLTVCLVCVYKLKXYXVRLLP 585
           PC  W   W +T   +CV       ++ +P
Sbjct: 487 PCCWWKICWTITTPAICVGVFTFNIIKFVP 516


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/30 (26%), Positives = 13/30 (43%)
 Frame = +1

Query: 496 PCH*WSPXWLLTVCLVCVYKLKXYXVRLLP 585
           PC  W   W +T   +CV       ++ +P
Sbjct: 540 PCCWWKICWTITTPAICVGVFTFNIIKFVP 569


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 350 ISMFFELEEKDLVFITNPDQXEKSEKGFLIXL 445
           ++MF+     D+  I+N +Q + S  GF I +
Sbjct: 527 LNMFYNNFNSDIKSISNNEQVKVSALGFFILI 558


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 350 ISMFFELEEKDLVFITNPDQXEKSEKGFLIXL 445
           ++MF+     D+  I+N +Q + S  GF I +
Sbjct: 527 LNMFYNNFNSDIKSISNNEQVKVSALGFFILI 558


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,180
Number of Sequences: 438
Number of extensions: 1696
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)