Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_K23
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    31   0.28 
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    28   1.5  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    28   1.5  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    27   2.7  

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -3

Query: 706  IGFVNEVVVFLVNAILSCGFRINEAMLHLCYVNFLQHFHIHKHFRVY 566
            I  + + V  +++A++  G   + ++L  C+VN   H   H+  R+Y
Sbjct: 917  IHVIEQTVKTVISALIRLGKDFDSSLLVSCFVNAFPHIPQHRRLRLY 963


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -2

Query: 272 RYHSLCQFYNIHHQ--CLVGSXLG 207
           +Y++ C FYNI H   C  G  LG
Sbjct: 35  KYYNFCPFYNIQHNYTCQTGDPLG 58


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 820 STRTVNESGSSSSKRSCQYPQ*SMSAFVLHYCINGV 713
           +T TV+ESGSSS+  +  YP  ++S    H   + V
Sbjct: 592 TTSTVSESGSSSASITSTYPSSTLSMTTSHLSSSSV 627


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 760 EDIGMNAYYYYFHSHLPFWWTSXKYGALKERRGXVTST 873
           +DIGM AY       L F W S ++G    + G +T+T
Sbjct: 118 QDIGMIAYVGTIVGQLSFGWYSDRFG---RKNGMITAT 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,106,848
Number of Sequences: 5004
Number of extensions: 59623
Number of successful extensions: 202
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)