Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_K19
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0374 + 22649455-22650024,22650085-22650637,22650812-226511...    31   0.88 
04_03_0513 - 16681227-16683936,16685572-16685966                       29   3.5  
07_01_0920 + 7749937-7750264,7750416-7750546,7751686-7751747,775...    29   4.7  

>09_06_0374 +
           22649455-22650024,22650085-22650637,22650812-22651147,
           22651171-22652605,22652939-22653062
          Length = 1005

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = -2

Query: 189 KAAXAFRRTQRQPVAX*XQXRXDGERGQEAPXKARQXAGAXPEEANXQKXVRRPE 25
           +   A R + R+P       + +GER ++ P ++ +   A P  A+ +  +RRP+
Sbjct: 344 RGGGAARASNRRPEGAAPTSQPEGERKKKRPPRSHRVPPAIPSPASLRPRIRRPQ 398


>04_03_0513 - 16681227-16683936,16685572-16685966
          Length = 1034

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +2

Query: 269  QQGLLHKHESLRKFHDDVQGRIPSQEFGILDLL 367
            Q G+LH+ ESL    +D+ G IP QE   LD L
Sbjct: 905  QLGMLHQLESLDLSSNDLSGEIP-QELASLDFL 936


>07_01_0920 +
           7749937-7750264,7750416-7750546,7751686-7751747,
           7752007-7752070
          Length = 194

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -3

Query: 479 SLVHVDSGVAXXFXETFKIFGIIEQLEQRDGFFPHFFVKDREFQILGKESDLVHH 315
           + V  D  VA  F +  K+ G+  +LE ++   P  F + +EF ILG    L HH
Sbjct: 116 NFVEQDECVARNFKQAAKLLGLDSKLE-KNLLIP--FREIKEFDILGHRLGLRHH 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,483,114
Number of Sequences: 37544
Number of extensions: 231512
Number of successful extensions: 500
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)