Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_K13
(864 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0771 + 6453130-6454488 40 0.003
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 38 0.010
11_01_0767 + 6438648-6438809,6439146-6440000 38 0.014
11_01_0750 - 6315126-6315896,6316371-6316784 38 0.014
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 38 0.014
01_01_1152 + 9170628-9171899 37 0.024
11_02_0011 - 7337618-7338496,7338596-7338991 36 0.032
11_02_0012 - 7346282-7347136,7347234-7347593 36 0.042
11_02_0014 - 7352619-7352918,7353173-7353418 33 0.22
03_02_0913 + 12344096-12344125,12344284-12345970,12346243-123465... 29 3.6
>11_01_0771 + 6453130-6454488
Length = 452
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +2
Query: 533 IXRWADEQTQGXIKTPVXEDXIXPXTXVAMFNVIFFQGXWXVPFXASEXEEKDF 694
I WA T I + + P T V + N I+F+G W PF S+ E K F
Sbjct: 177 INAWARRATGKLITDVLPPRSVGPETAVVLGNAIYFKGKWDRPFNESDTERKPF 230
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 37.9 bits (84), Expect = 0.010
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 533 IXRWADEQTQGXIKTPVXEDXIXPXTXVAMFNVIFFQGXWXVPFXASEXEEKDF 694
+ W D T G IK I T + + N ++F+G W F S+ E+ +F
Sbjct: 469 VNSWVDRVTSGLIKNIATPRSINHNTKLVLANALYFKGAWAEKFDVSKTEDGEF 522
Score = 36.3 bits (80), Expect = 0.032
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +2
Query: 533 IXRWADEQTQGXIKTPVXEDXIXPXTXVAMFNVIFFQGXWXVPFXASEXEEKDF 694
+ W ++ T G IK + + T + + N ++F+G W F AS+ ++ +F
Sbjct: 217 VNSWVEKVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEF 270
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 37.5 bits (83), Expect = 0.014
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Frame = +2
Query: 422 YVSDQYKLXDAF-SRTANLFRSEVDNINF-SAPKNAXDIIXRWADEQTQGXIKTPVXEDX 595
++ Y L A+ ++ ++F + P A I W T+ I + +
Sbjct: 23 WLDASYSLKPAYRDAIVGTYKGAASTVDFKNHPVEARKEINAWVARATKNLITEVIKPES 82
Query: 596 IXPXTXVAMFNVIFFQGXWXVPFXASEXEEKDF 694
T + N I+F+G W PF S+ E++F
Sbjct: 83 QSVDTRHVVGNAIYFKGEWLAPFDKSDTAEREF 115
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 37.5 bits (83), Expect = 0.014
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Frame = +2
Query: 362 LLNQRYAEFDPKFLTVANKIYVSDQYKLXDAFSRTA-NLFRSEVDNINF-SAPKNAXDII 535
+L R P+ L A ++ L F A N++ S +F + P++A D I
Sbjct: 88 VLRDRSTSGGPR-LAFAGGVWADASRSLSPEFVGLAGNVYGSAAKKADFKNKPEDAPDQI 146
Query: 536 XRWADEQTQGXIKTPVXEDXIXPXTXVAMFNVIFFQGXW 652
W + T+G + T + I T + + + ++F+G W
Sbjct: 147 NSWVKDSTKGTVTTLLPAGTIDQNTGLVLGSALYFRGRW 185
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 37.5 bits (83), Expect = 0.014
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +2
Query: 533 IXRWADEQTQGXIKTPVXEDXIXPXTXVAMFNVIFFQGXWXVPFXASEXEEKDF 694
+ W D T G IK + + T + + N ++F+G W F AS+ ++ +F
Sbjct: 9 VNSWVDRVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEF 62
>01_01_1152 + 9170628-9171899
Length = 423
Score = 36.7 bits (81), Expect = 0.024
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +2
Query: 512 PKNAXDIIXRWADEQTQGXIKTPVXEDXIXPXTXVAMFNVIFFQGXWXVPFXAS 673
P+ A + + + + T+G I+ + + + T V + N + F+G W +PF S
Sbjct: 156 PEQARERVNAFVSDATEGLIRDVLPPNSVDSSTVVVLANAVHFKGTWSLPFHPS 209
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 36.3 bits (80), Expect = 0.032
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = +2
Query: 419 IYVSDQYKLXDAF-SRTANLFRSEVDNINFSA-PKNAXDIIXRWADEQTQGXIKTPVXED 592
++ + +L A+ + A +++ NF PK + I +W + T I + +
Sbjct: 100 VWHDETLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWVSKATNKLIPEILPDG 159
Query: 593 XIXPXTXVAMFNVIFFQGXWXVPFXAS 673
+ T + + N I+F+G W PF S
Sbjct: 160 SVHVDTALVLVNAIYFKGKWSNPFPRS 186
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 35.9 bits (79), Expect = 0.042
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +2
Query: 512 PKNAXDIIXRWADEQTQGXIKTPVXEDXIXPXTXVAMFNVIFFQGXWXVPF 664
PK++ I +W + T I+ + + + T + + N I+F+G W PF
Sbjct: 121 PKSSRKKINKWVSKATNKLIREILPDGSVHGGTALVLVNAIYFKGKWSNPF 171
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 33.5 bits (73), Expect = 0.22
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +2
Query: 512 PKNAXDIIXRWADEQTQGXIKTPVXEDXIXPXTXVAMFNVIFFQGXWXVPF 664
PK + I W + T I + + + T + + N I+F+G W PF
Sbjct: 83 PKKSRKKINEWVSKATNKLIPEILPDGSVHRLTTLVLVNAIYFKGKWSDPF 133
>03_02_0913 +
12344096-12344125,12344284-12345970,12346243-12346573,
12346712-12347567,12347760-12347883,12348469-12348688,
12348771-12349229,12349318-12349519
Length = 1302
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = +2
Query: 275 SLEPVHSPRXXXREILGGGEAQESTHTYGLLNQRYAEFDPKFLTVANK--IYVSDQYKLX 448
++E HSP ++ + QE + + + ++F+ F + + IY++D +
Sbjct: 96 AMEMQHSPSSLEIGVVSSSQPQEKPNRPQRVRNKSSQFEDPFSSEHDPRLIYINDPNRTN 155
Query: 449 DAFSRTANLFRSEVDNINFSAPKN 520
D + T N R+ + PKN
Sbjct: 156 DRYEFTGNEIRTSKYTLITFLPKN 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,835,382
Number of Sequences: 37544
Number of extensions: 267300
Number of successful extensions: 544
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -