Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_K12
(1097 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.22
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.38
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.1
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.22
Identities = 21/74 (28%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Frame = +2
Query: 503 PSXPAPXXXPPXXTKTXLPXSFXSXXGSXPXXHPXPPTXXXXPXXPTXRP--PXLEXXXP 676
P P P PP + P + S P P PP+ P P P P L P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Query: 677 XXSP-PXLXPXXPL 715
P P P P+
Sbjct: 475 APPPAPAPAPAAPV 488
Score = 27.5 bits (58), Expect = 3.5
Identities = 29/109 (26%), Positives = 36/109 (33%), Gaps = 2/109 (1%)
Frame = +1
Query: 526 PPPXXXXNXPPPFFXIXXRFXPXQXPXX-PHXXPXXQXPHVXPTXXRXXXAPXLPAXSLX 702
PPP P + P P P P + P+ P LP +
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAP-----PSLPMGA-P 444
Query: 703 XXXPPRPHXXXSPXXPS-QXXXPXLPPHXXAPPPXXX*XSAPXXAVPLA 846
P P +P P+ P LPP APPP AP A P+A
Sbjct: 445 AAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP----APAPAPAAPVA 489
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 30.7 bits (66), Expect = 0.38
Identities = 25/105 (23%), Positives = 28/105 (26%), Gaps = 1/105 (0%)
Frame = +3
Query: 531 PPSXXKPASPXLXYHXPV-XXPXXTXXPPXXXXXPXXPRXAHPXSXXXXPXXPRLLSXXX 707
PPS P +P P P + PP P P A P P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183
Query: 708 XPSPPTXPPLXXXSXXXRXT*XPAPQXCXTPXXXIXLRPXXXXPP 842
PS P+ P P P P RP PP
Sbjct: 184 PPSAPSLPSAVPPMPPK----VPPPPLSQAPVANTSSRPSSFAPP 224
Score = 29.5 bits (63), Expect = 0.87
Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Frame = +2
Query: 503 PSXPAPXXXPPXXTKTXLPXSFXSXXGSXPXXHPX--PPTXXXXPXXPTXRPPXLEXXXP 676
PS PAP P P + S P P PP P P+ PP + P
Sbjct: 125 PSAPAP----PTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180
Query: 677 XXSPP 691
SPP
Sbjct: 181 VKSPP 185
Score = 28.7 bits (61), Expect = 1.5
Identities = 22/70 (31%), Positives = 27/70 (38%)
Frame = +2
Query: 881 TPXXXLRXPSPQXXXPSFRPSFXALXSXPXSXNXLPPPLXSXQRHPSTHXXQXXSPTSXS 1060
TP LR P+ PS P A S P + PP + S P+ SP S
Sbjct: 132 TPQSELRPPTSAPPRPSIPPPSPA--SAPPIPSKAPP-IPSSLPPPAQPAAPVKSPPSAP 188
Query: 1061 XLPPPXLPLP 1090
LP P+P
Sbjct: 189 SLPSAVPPMP 198
Score = 27.5 bits (58), Expect = 3.5
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Frame = +2
Query: 572 SXXGSXPXXHPXPPTXXXXPXXPTXRP--PXLEXXXPXXSPPXLXPXXPLPA 721
S + P P PPT PT P P + P +PP P+P+
Sbjct: 118 SSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPS 169
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 1.1
Identities = 26/106 (24%), Positives = 31/106 (29%), Gaps = 1/106 (0%)
Frame = +1
Query: 526 PPPXXXXNXPPPFFXIXXRFXPXQXPXXPHXXPXXQXPHVX-PTXXRXXXAPXLPAXSLX 702
PP PP P P P P P+ AP +PA S
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPS-G 1090
Query: 703 XXXPPRPHXXXSPXXPSQXXXPXLPPHXXAPPPXXX*XSAPXXAVP 840
P+P P P +P APP +AP VP
Sbjct: 1091 IPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136
Score = 29.1 bits (62), Expect = 1.1
Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Frame = +1
Query: 610 PHXXPXXQXPHVX-PTXXRXXXAPXLPAXSLXXXXPPRPHXXXSPXXPSQXXXPXLPPHX 786
P P P V P AP +P S+ P P P P +PP
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPS 1195
Query: 787 XAPP 798
APP
Sbjct: 1196 EAPP 1199
Score = 28.3 bits (60), Expect = 2.0
Identities = 22/95 (23%), Positives = 26/95 (27%), Gaps = 1/95 (1%)
Frame = +1
Query: 517 SXXPPPXXXXNXPP-PFFXIXXRFXPXQXPXXPHXXPXXQXPHVXPTXXRXXXAPXLPAX 693
S PP + PP P P P P P P P +P
Sbjct: 1038 STAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKP 1097
Query: 694 SLXXXXPPRPHXXXSPXXPSQXXXPXLPPHXXAPP 798
S+ P+P P P P APP
Sbjct: 1098 SVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPP 1132
Score = 27.5 bits (58), Expect = 3.5
Identities = 21/77 (27%), Positives = 24/77 (31%), Gaps = 4/77 (5%)
Frame = +2
Query: 503 PSXPAPXXXPPXXTKTXLPXSFXSXXG--SXPXXHPXPPTXXXXPXXPTXRP--PXLEXX 670
P P P PP T P S G S P P P + P+ P P
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGI 1091
Query: 671 XPXXSPPXLXPXXPLPA 721
P P P P P+
Sbjct: 1092 PPVPKPSVAAPPVPKPS 1108
Score = 26.6 bits (56), Expect = 6.1
Identities = 28/111 (25%), Positives = 32/111 (28%), Gaps = 3/111 (2%)
Frame = +1
Query: 517 SXXPPPXXXXNXPPPFFXIXXRFXPXQXPXX---PHXXPXXQXPHVXPTXXRXXXAPXLP 687
S PP + PP P P P P P V P AP +P
Sbjct: 1146 SVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSE----APPVP 1201
Query: 688 AXSLXXXXPPRPHXXXSPXXPSQXXXPXLPPHXXAPPPXXX*XSAPXXAVP 840
S+ P P PS P P APP AP + P
Sbjct: 1202 KPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTP 1252
Score = 26.6 bits (56), Expect = 6.1
Identities = 17/58 (29%), Positives = 21/58 (36%)
Frame = +1
Query: 673 APXLPAXSLXXXXPPRPHXXXSPXXPSQXXXPXLPPHXXAPPPXXX*XSAPXXAVPLA 846
AP +PA S P+P P P P +P PP +AP P A
Sbjct: 1168 APPVPAPSSGIPPVPKPAAGVPPVPPPS-EAPPVPKPSVGVPPVPPPSTAPPVPTPSA 1224
Score = 26.2 bits (55), Expect = 8.1
Identities = 20/80 (25%), Positives = 23/80 (28%), Gaps = 1/80 (1%)
Frame = +1
Query: 610 PHXXPXXQXPHVXPTXXRXXXAPXLPAXSLXXXXPPRPHXXXSPXXPS-QXXXPXLPPHX 786
P P P V + P PP P +P P P +PP
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPS 1214
Query: 787 XAPPPXXX*XSAPXXAVPLA 846
APP P VP A
Sbjct: 1215 TAPPVPTPSAGLPPVPVPTA 1234
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,825
Number of Sequences: 5004
Number of extensions: 23725
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 579724962
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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