Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_K12
(1097 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55366-3|AAY86188.1| 118|Caenorhabditis elegans Hypothetical pr... 34 0.21
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.48
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.48
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 31 1.1
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 31 1.5
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 29 5.9
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 5.9
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 5.9
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 5.9
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 29 5.9
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 7.8
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 7.8
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 7.8
>U55366-3|AAY86188.1| 118|Caenorhabditis elegans Hypothetical
protein F41F3.8 protein.
Length = 118
Score = 33.9 bits (74), Expect = 0.21
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +1
Query: 685 PAXSLXXXXPPRPHXXXSPXXPSQXXXPXLPPHXXAPPP 801
P+ SL PRP P P P LPP PPP
Sbjct: 29 PSLSLCGGCAPRPRVAAPPFAPPPPPSPPLPPKCECPPP 67
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.7 bits (71), Expect = 0.48
Identities = 22/85 (25%), Positives = 27/85 (31%), Gaps = 2/85 (2%)
Frame = +1
Query: 553 PPPFFXIXXRFXPXQXPXXPHXXPXX--QXPHVXPTXXRXXXAPXLPAXSLXXXXPPRPH 726
PPP + Q P P P P + PT P P+ + PP P
Sbjct: 245 PPPLMGMAQSGYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPP- 303
Query: 727 XXXSPXXPSQXXXPXLPPHXXAPPP 801
+P P P PP PP
Sbjct: 304 PGRTPGPPGMPGMPPPPPPSRFGPP 328
Score = 30.3 bits (65), Expect = 2.5
Identities = 20/75 (26%), Positives = 22/75 (29%), Gaps = 3/75 (4%)
Frame = +3
Query: 519 PXPXPPSXXKPASPXLXYHXPVXXPXXTXXPPXXXXXPXXPRXAHPXSXXXXPXXPRLLS 698
P P PP P P + P P P P P P PR S
Sbjct: 298 PPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPS 357
Query: 699 ---XXXXPSPPTXPP 734
P PP+ PP
Sbjct: 358 AGPGMYPPPPPSRPP 372
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.7 bits (71), Expect = 0.48
Identities = 22/85 (25%), Positives = 27/85 (31%), Gaps = 2/85 (2%)
Frame = +1
Query: 553 PPPFFXIXXRFXPXQXPXXPHXXPXX--QXPHVXPTXXRXXXAPXLPAXSLXXXXPPRPH 726
PPP + Q P P P P + PT P P+ + PP P
Sbjct: 255 PPPLMGMAQSGYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPP- 313
Query: 727 XXXSPXXPSQXXXPXLPPHXXAPPP 801
+P P P PP PP
Sbjct: 314 PGRTPGPPGMPGMPPPPPPSRFGPP 338
Score = 30.3 bits (65), Expect = 2.5
Identities = 20/75 (26%), Positives = 22/75 (29%), Gaps = 3/75 (4%)
Frame = +3
Query: 519 PXPXPPSXXKPASPXLXYHXPVXXPXXTXXPPXXXXXPXXPRXAHPXSXXXXPXXPRLLS 698
P P PP P P + P P P P P P PR S
Sbjct: 308 PPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPS 367
Query: 699 ---XXXXPSPPTXPP 734
P PP+ PP
Sbjct: 368 AGPGMYPPPPPSRPP 382
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical protein
C33B4.3b protein.
Length = 993
Score = 31.5 bits (68), Expect = 1.1
Identities = 24/94 (25%), Positives = 27/94 (28%), Gaps = 2/94 (2%)
Frame = +2
Query: 380 PPPPXPMXHSNXKWXXXXXXXXXXXXXXXXXXXXXXXRP*XPSXPAPXXXPPXXTKTXLP 559
PPPP PM H N + + P P P PP T +
Sbjct: 724 PPPPPPMQHQNHQNHQYQQQHPSLPRSASTPQPIQQQQSSIP-PPPPPPPPPHCEPTMVH 782
Query: 560 XSF--XSXXGSXPXXHPXPPTXXXXPXXPTXRPP 655
F S P P PP P P PP
Sbjct: 783 VEFTPPSTSSVPPPPPPLPPISSGAPPPPPPPPP 816
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical protein
C33B4.3a protein.
Length = 1110
Score = 31.5 bits (68), Expect = 1.1
Identities = 24/94 (25%), Positives = 27/94 (28%), Gaps = 2/94 (2%)
Frame = +2
Query: 380 PPPPXPMXHSNXKWXXXXXXXXXXXXXXXXXXXXXXXRP*XPSXPAPXXXPPXXTKTXLP 559
PPPP PM H N + + P P P PP T +
Sbjct: 724 PPPPPPMQHQNHQNHQYQQQHPSLPRSASTPQPIQQQQSSIP-PPPPPPPPPHCEPTMVH 782
Query: 560 XSF--XSXXGSXPXXHPXPPTXXXXPXXPTXRPP 655
F S P P PP P P PP
Sbjct: 783 VEFTPPSTSSVPPPPPPLPPISSGAPPPPPPPPP 816
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 31.1 bits (67), Expect = 1.5
Identities = 24/88 (27%), Positives = 28/88 (31%)
Frame = +3
Query: 471 PSXXPXYXPXLPQXXLPXPXPPSXXKPASPXLXYHXPVXXPXXTXXPPXXXXXPXXPRXA 650
P+ P P PQ +P P PP P + PV P P P P
Sbjct: 63 PAPAPPPAPY-PQHAVPAPAPPLASYPQNAV-----PVPAPPPAPYPQHAVPAPAPPPAP 116
Query: 651 HPXSXXXXPXXPRLLSXXXXPSPPTXPP 734
+P P P P PP PP
Sbjct: 117 YPQHAVPAP-APYQQQPPPPPPPPHYPP 143
Score = 28.7 bits (61), Expect = 7.8
Identities = 19/80 (23%), Positives = 22/80 (27%), Gaps = 4/80 (5%)
Frame = +3
Query: 504 PQXXLPXPXPPSXXKPA----SPXLXYHXPVXXPXXTXXPPXXXXXPXXPRXAHPXSXXX 671
PQ +P P PP P +P P P PP P P H
Sbjct: 103 PQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYPPPPPAPHSAYIDH 162
Query: 672 XPXXPRLLSXXXXPSPPTXP 731
P + P P P
Sbjct: 163 SAPRPAYIEHSAPPPQPQYP 182
Score = 28.7 bits (61), Expect = 7.8
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +1
Query: 715 PRPHXXXSPXXPSQXXXPXLPPHXXAPPP 801
P P+ P P P PPH PPP
Sbjct: 125 PAPYQQQPPPPPPPPHYPPPPPHYPPPPP 153
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 29.1 bits (62), Expect = 5.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -3
Query: 1044 EXCWXXWVEGWRCXEXXGGGRXF 976
E CW W E C + GGGR +
Sbjct: 804 EGCWTNWDEWSSCSQSCGGGRRY 826
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 29.1 bits (62), Expect = 5.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -3
Query: 1044 EXCWXXWVEGWRCXEXXGGGRXF 976
E CW W E C + GGGR +
Sbjct: 804 EGCWTNWDEWSSCSQSCGGGRRY 826
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 5.9
Identities = 20/72 (27%), Positives = 21/72 (29%), Gaps = 2/72 (2%)
Frame = +3
Query: 525 PXPPSXXKPASPXLXYHXPVXXPXXTXXPPXXXXXPXXPRXAH--PXSXXXXPXXPRLLS 698
P PP K + P P P PP P P P P PR S
Sbjct: 237 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGS 296
Query: 699 XXXXPSPPTXPP 734
P P PP
Sbjct: 297 PPPPPPPRGSPP 308
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 5.9
Identities = 20/72 (27%), Positives = 21/72 (29%), Gaps = 2/72 (2%)
Frame = +3
Query: 525 PXPPSXXKPASPXLXYHXPVXXPXXTXXPPXXXXXPXXPRXAH--PXSXXXXPXXPRLLS 698
P PP K + P P P PP P P P P PR S
Sbjct: 258 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGS 317
Query: 699 XXXXPSPPTXPP 734
P P PP
Sbjct: 318 PPPPPPPRGSPP 329
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 5.9
Identities = 20/72 (27%), Positives = 21/72 (29%), Gaps = 2/72 (2%)
Frame = +3
Query: 525 PXPPSXXKPASPXLXYHXPVXXPXXTXXPPXXXXXPXXPRXAH--PXSXXXXPXXPRLLS 698
P PP K + P P P PP P P P P PR S
Sbjct: 243 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGS 302
Query: 699 XXXXPSPPTXPP 734
P P PP
Sbjct: 303 PPPPPPPRGSPP 314
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 29.1 bits (62), Expect = 5.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -3
Query: 1044 EXCWXXWVEGWRCXEXXGGGRXF 976
E CW W E C + GGGR +
Sbjct: 804 EGCWTNWDEWSSCSQSCGGGRRY 826
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.7 bits (61), Expect = 7.8
Identities = 16/65 (24%), Positives = 18/65 (27%)
Frame = +3
Query: 495 PXLPQXXLPXPXPPSXXKPASPXLXYHXPVXXPXXTXXPPXXXXXPXXPRXAHPXSXXXX 674
P +P +P P P P P P P PP P P
Sbjct: 67 PPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPPSGLGVA 126
Query: 675 PXXPR 689
P PR
Sbjct: 127 PQPPR 131
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.7 bits (61), Expect = 7.8
Identities = 28/100 (28%), Positives = 28/100 (28%)
Frame = -2
Query: 733 GGXVGGEGXXXXEXRRGXXGXXXFEXGWAXRGXXGXXXXXGGXXVXXGXXTGX*XKRXGE 554
GG GG G G G G G G GG G G G
Sbjct: 80 GGGCGGGGGGCGGGGGGCGG------GGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGG 133
Query: 553 AGFXXXGGXGXGSXX*GXLGXXWGXXEGXCGGARVWVXGG 434
G GG G G G G G CGG GG
Sbjct: 134 GGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCGG 173
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.7 bits (61), Expect = 7.8
Identities = 28/100 (28%), Positives = 28/100 (28%)
Frame = -2
Query: 733 GGXVGGEGXXXXEXRRGXXGXXXFEXGWAXRGXXGXXXXXGGXXVXXGXXTGX*XKRXGE 554
GG GG G G G G G G GG G G G
Sbjct: 80 GGGCGGGGGGCGGGGGGCGG------GGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGG 133
Query: 553 AGFXXXGGXGXGSXX*GXLGXXWGXXEGXCGGARVWVXGG 434
G GG G G G G G CGG GG
Sbjct: 134 GGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCGG 173
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,080,877
Number of Sequences: 27780
Number of extensions: 187089
Number of successful extensions: 934
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2960813354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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