Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_K10
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...   138   1e-33
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...   138   1e-33
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...   138   1e-33

>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score =  138 bits (334), Expect = 1e-33
 Identities = 74/186 (39%), Positives = 92/186 (49%)
 Frame = +1

Query: 196 YAXRXGXXXGVVKXXXXXPGXGAPLAVVXFRDPYXFXXXXXLFIAPEGLYXGXFVYCGXX 375
           +A R G   GVV+     PG GAPLA V FR+PY +      F+A EG+Y G FVYCG  
Sbjct: 33  FAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKN 92

Query: 376 AXLEVGXVXPVGAXPEGXXVCXLXXXXGXXGRLARASGXFAXVIGXXPDAKRXXVXLPSG 555
           A L VG V PVG  PEG  +  +    G  G L R+SG +  ++G   D  +  V LPSG
Sbjct: 93  AALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSG 152

Query: 556 AXKVLPSXNXXXXXXXXXXXRXXXPILXAGXAXXXXQVXRXCLAICTWCCXDPLXXXPPG 735
           A KV+PS             R   P+L AG A    +V R C         +P+   P G
Sbjct: 153 AKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPV-DHPHG 211

Query: 736 GGXHHH 753
           GG H H
Sbjct: 212 GGNHQH 217


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  138 bits (334), Expect = 1e-33
 Identities = 74/186 (39%), Positives = 92/186 (49%)
 Frame = +1

Query: 196 YAXRXGXXXGVVKXXXXXPGXGAPLAVVXFRDPYXFXXXXXLFIAPEGLYXGXFVYCGXX 375
           +A R G   GVV+     PG GAPLA V FR+PY +      F+A EG+Y G FVYCG  
Sbjct: 33  FAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKN 92

Query: 376 AXLEVGXVXPVGAXPEGXXVCXLXXXXGXXGRLARASGXFAXVIGXXPDAKRXXVXLPSG 555
           A L VG V PVG  PEG  +  +    G  G L R+SG +  ++G   D  +  V LPSG
Sbjct: 93  AALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSG 152

Query: 556 AXKVLPSXNXXXXXXXXXXXRXXXPILXAGXAXXXXQVXRXCLAICTWCCXDPLXXXPPG 735
           A KV+PS             R   P+L AG A    +V R C         +P+   P G
Sbjct: 153 AKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPV-DHPHG 211

Query: 736 GGXHHH 753
           GG H H
Sbjct: 212 GGNHQH 217


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  138 bits (334), Expect = 1e-33
 Identities = 74/186 (39%), Positives = 92/186 (49%)
 Frame = +1

Query: 196 YAXRXGXXXGVVKXXXXXPGXGAPLAVVXFRDPYXFXXXXXLFIAPEGLYXGXFVYCGXX 375
           +A R G   GVV+     PG GAPLA V FR+PY +      F+A EG+Y G FVYCG  
Sbjct: 33  FAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKN 92

Query: 376 AXLEVGXVXPVGAXPEGXXVCXLXXXXGXXGRLARASGXFAXVIGXXPDAKRXXVXLPSG 555
           A L VG V PVG  PEG  +  +    G  G L R+SG +  ++G   D  +  V LPSG
Sbjct: 93  AALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSG 152

Query: 556 AXKVLPSXNXXXXXXXXXXXRXXXPILXAGXAXXXXQVXRXCLAICTWCCXDPLXXXPPG 735
           A KV+PS             R   P+L AG A    +V R C         +P+   P G
Sbjct: 153 AKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPV-DHPHG 211

Query: 736 GGXHHH 753
           GG H H
Sbjct: 212 GGNHQH 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,722,644
Number of Sequences: 5004
Number of extensions: 16776
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)