Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_K10
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      139   3e-33
07_01_0253 + 1888831-1889399,1890121-1890526,1890980-1891195,189...    28   8.7  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  139 bits (336), Expect = 3e-33
 Identities = 76/191 (39%), Positives = 93/191 (48%)
 Frame = +1

Query: 196 YAXRXGXXXGVVKXXXXXPGXGAPLAVVXFRDPYXFXXXXXLFIAPEGLYXGXFVYCGXX 375
           +  R G   GVV      PG GAPLA V FR P+ +     LF+A EG+Y G FVYCG  
Sbjct: 34  FGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRR 93

Query: 376 AXLEVGXVXPVGAXPEGXXVCXLXXXXGXXGRLARASGXFAXVIGXXPDAKRXXVXLPSG 555
           A L +G V P+ + PEG  VC +    G  G  ARASG +A VI   PD     + LPSG
Sbjct: 94  ATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNPDNGTSRIKLPSG 153

Query: 556 AXKVLPSXNXXXXXXXXXXXRXXXPILXAGXAXXXXQVXRXCLAICTWCCXDPLXXXPPG 735
           A K++PS             R   P+L AG A    +V R C         +P+   P G
Sbjct: 154 AKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPV-EHPHG 212

Query: 736 GGXHHHXXTAS 768
           GG H H   AS
Sbjct: 213 GGNHQHIGHAS 223



 Score = 38.7 bits (86), Expect = 0.006
 Identities = 19/31 (61%), Positives = 20/31 (64%)
 Frame = +3

Query: 99  GRVXRAXRXGAGSVFVSHTXXXXGAPKLRSL 191
           GRV RA R GAGSVF SHT    G  + RSL
Sbjct: 2   GRVIRAQRKGAGSVFKSHTHHRKGPARFRSL 32


>07_01_0253 +
           1888831-1889399,1890121-1890526,1890980-1891195,
           1891441-1891548,1892085-1892359,1892462-1892714
          Length = 608

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/46 (28%), Positives = 15/46 (32%)
 Frame = +1

Query: 745 HHHXXTASPXSPXXTSAXXXXLGSXXXSPDPXXFPGXPPPXPXXXT 882
           H H  T  P  P           S   +P    +P  PPP P   T
Sbjct: 16  HLHLHTPKPSPPRRLRLAAAAAASRLQNPTTTHYPNLPPPAPPPST 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,894,872
Number of Sequences: 37544
Number of extensions: 184134
Number of successful extensions: 447
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)