Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_K08
         (844 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773...    36   0.053

>08_02_1410 -
           26876243-26876497,26877129-26877239,26877240-26877324,
           26877620-26877672,26878318-26878440,26878514-26878597,
           26878708-26878773,26879512-26879584,26879854-26879888,
           26879970-26880212
          Length = 375

 Score = 35.5 bits (78), Expect = 0.053
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 682 FCRQXVDPMXXEXXHIHIXXLSXALKVCVXXXYM 783
           FC+  V+PM  E  H+HI  LS AL V +   Y+
Sbjct: 292 FCKASVEPMGEESDHVHIIALSDALGVPIRVMYL 325



 Score = 30.3 bits (65), Expect = 2.0
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
 Frame = +2

Query: 263 VXXLSSKXXXXXRXRPDGXCFFRAFSYAXLXRLL--TXXXXXXXFYXXAXXSKXXLVALG 436
           +  L  +     R R DG CF+R+F ++ L  +L                  K  L  LG
Sbjct: 138 IKLLGEQYDALRRTRGDGNCFYRSFMFSYLEHILETQDKAEVERILKKIEQCKKTLADLG 197

Query: 437 FSXFXVXXFYEXFMXVXQXV 496
           +  F    F+  F+   + V
Sbjct: 198 YIEFTFEDFFSIFIDQLESV 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,793,339
Number of Sequences: 37544
Number of extensions: 79186
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)