Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_K05
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...   137   2e-33

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  137 bits (331), Expect = 2e-33
 Identities = 65/145 (44%), Positives = 85/145 (58%)
 Frame = +1

Query: 169 FFLVQXXGVXXGLVGTXXXRLEKQGFKLXGLKFVWPSXALXQXXXXDLXSRTFFPGLVKY 348
           F  V+   V  GL+G    + E +G+KL  LKF+ PS  L +    +   + F+  LV +
Sbjct: 7   FIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKLVGF 66

Query: 349 MSXGPVVPMVWEGLNVVKTGRQXXGAXXPXDSQPGTIRGDLWIQVGRNIIHGSDSVESXK 528
           M+ GPV  M+WEG   VKTGR   GA  P DS PGTIRGD  I +GRN+ HGSDS+ES  
Sbjct: 67  MASGPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCHGSDSIESAN 126

Query: 529 KEIGLWFTDKEVVGWTPANEKWVYE 603
           +EI LWF   E+  +    E W+YE
Sbjct: 127 REIKLWFQPSEIQVYDRTIEPWIYE 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,884,807
Number of Sequences: 5004
Number of extensions: 27891
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)