Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_K04
(870 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 55 2e-08
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 52 1e-07
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 46 5e-06
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 35 0.013
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 33 0.070
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 32 0.092
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc... 28 2.0
SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces... 26 6.1
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 54.8 bits (126), Expect = 2e-08
Identities = 26/84 (30%), Positives = 49/84 (58%)
Frame = +2
Query: 347 SDQVEILTNKNFEKKLYGQNNALLVQFYNSYCGXCRAFSPKYKALASDIARWKKVIKLAV 526
S+ +E L +KNF K + + +L+V FY +CG C+ P Y+ LAS++ ++ +
Sbjct: 31 SNTIE-LNSKNFRKFVKAKGPSLVV-FYAPWCGYCKKLVPTYQKLASNL---HSLLPVTA 85
Query: 527 IDCFVEXNSXICRXFEVXAYPSIR 598
+DC + N +C ++V +P+I+
Sbjct: 86 VDCDADQNRAVCSQYQVQGFPTIK 109
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 52.0 bits (119), Expect = 1e-07
Identities = 24/78 (30%), Positives = 43/78 (55%)
Frame = +2
Query: 371 NKNFEKKLYGQNNALLVQFYNSYCGXCRAFSPKYKALASDIARWKKVIKLAVIDCFVEXN 550
NK +L + L+V+FY +CG C+A +P+Y++ A ++ K I L +DC E +
Sbjct: 28 NKEGLNELITADKVLMVKFYAPWCGHCKALAPEYESAADELE--KDGISLVEVDCTEEGD 85
Query: 551 SXICRXFEVXAYPSIRYF 604
+C + + YP++ F
Sbjct: 86 --LCSEYSIRGYPTLNVF 101
Score = 43.2 bits (97), Expect = 5e-05
Identities = 24/98 (24%), Positives = 48/98 (48%)
Frame = +2
Query: 320 VDEQGLYRKSDQVEILTNKNFEKKLYGQNNALLVQFYNSYCGXCRAFSPKYKALASDIAR 499
+ Q + + + +L NF+ + + +LV+FY +CG C+ +P Y+ LA + +
Sbjct: 345 IKSQPIPESQEDLVVLVADNFDDIVMDETKDVLVEFYAPWCGHCKNLAPTYEKLAEEYSD 404
Query: 500 WKKVIKLAVIDCFVEXNSXICRXFEVXAYPSIRYFHEN 613
V+ +A ID E + + + +P+I +F N
Sbjct: 405 DSNVV-VAKIDA-TENDISV----SISGFPTIMFFKAN 436
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 46.4 bits (105), Expect = 5e-06
Identities = 25/86 (29%), Positives = 46/86 (53%)
Frame = +2
Query: 347 SDQVEILTNKNFEKKLYGQNNALLVQFYNSYCGXCRAFSPKYKALASDIARWKKVIKLAV 526
S+ VE L + NF+K + +LV+FY +CG C+ +P Y+ L +K + +
Sbjct: 140 SNVVE-LDSLNFDKVVMDDKKDVLVEFYADWCGYCKRLAPTYETLGK---VFKNEPNVEI 195
Query: 527 IDCFVEXNSXICRXFEVXAYPSIRYF 604
+ + + I R EV ++P+I++F
Sbjct: 196 VKINADVFADIGRLHEVASFPTIKFF 221
Score = 39.5 bits (88), Expect = 6e-04
Identities = 19/86 (22%), Positives = 42/86 (48%)
Frame = +2
Query: 347 SDQVEILTNKNFEKKLYGQNNALLVQFYNSYCGXCRAFSPKYKALASDIARWKKVIKLAV 526
S VE+ + E + L++FY ++CG C++ +P Y+ L + V+ +
Sbjct: 20 SGVVELQSLNELENTIRASKKGALIEFYATWCGHCKSLAPVYEELGALFEDHNDVL-IGK 78
Query: 527 IDCFVEXNSXICRXFEVXAYPSIRYF 604
ID + +S + + + +P++ +F
Sbjct: 79 ID--ADTHSDVADKYHITGFPTLIWF 102
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 35.1 bits (77), Expect = 0.013
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +2
Query: 419 VQFYNSYCGXCRAFSPKYKALASDIARWKKVIKLAVIDCFVEXNSXICRXFEVXAYPSIR 598
+QFY+S C C S + A+A+ R + + +A I+C V + C+ + + +P+
Sbjct: 303 IQFYSSECDDCDDVSTAWYAMAN---RMRGKLNVAHINCAVSKRA--CKQYSIQYFPTFL 357
Query: 599 YFHE 610
+F E
Sbjct: 358 FFKE 361
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 32.7 bits (71), Expect = 0.070
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +2
Query: 386 KKLYGQNNALLVQFYNSYCGXCRAFSPKYKALAS 487
K + Q+ ++V F+ ++CG C+A +PK++ ++
Sbjct: 12 KSIVCQDKLVVVDFFATWCGPCKAIAPKFEQFSN 45
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 32.3 bits (70), Expect = 0.092
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 413 LLVQFYNSYCGXCRAFSPKYKALASDIARWKKVIKLAVID 532
L V Y +CG C+A SP + LAS A K V +D
Sbjct: 22 LAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVD 61
>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 810 CSQCXXGYTCKAXA*DXYDSILNDGXSIRRPIEXXACNFII 688
CS C CKA +++ DG +I+ IE CN I
Sbjct: 233 CSVCPISEICKAYQ---EQNVIRDGNTIKYDIEDVPCNICI 270
>SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 152 CQENFN*FSYLQNLHLIR 99
CQE+ N ++L+NLH IR
Sbjct: 58 CQESLNLDAFLENLHYIR 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,749
Number of Sequences: 5004
Number of extensions: 51936
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -