Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_K03
(937 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 30 2.1
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 30 2.1
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 30 2.1
AF101312-1|AAC69221.3| 813|Caenorhabditis elegans Hypothetical ... 30 2.1
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 30 2.7
Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 8.3
U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter... 28 8.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 8.3
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 28 8.3
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3
Query: 750 PPXCPXXGPPPXPPXPXSXXPP 815
PP CP PPP PP P PP
Sbjct: 59 PPMCPP--PPPPPPPPMCPPPP 78
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 750 PPXCPXXGPPPXPPXPXSXXPP 815
PP P PPP PP P + PP
Sbjct: 2 PPPPPPPPPPPPPPPPAASAPP 23
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +3
Query: 750 PPXCPXXGPPPXPPXPXSXXPPFSXXR 830
PP P PPP PP S PP S R
Sbjct: 3 PPPPPPPPPPPPPPPAASAPPPSSNAR 29
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 750 PPXCPXXGPPPXPPXPXSXXPP 815
PP P PPP PP P + PP
Sbjct: 2 PPPPPPPPPPPPPPPPAASAPP 23
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +3
Query: 750 PPXCPXXGPPPXPPXPXSXXPPFSXXR 830
PP P PPP PP S PP S R
Sbjct: 3 PPPPPPPPPPPPPPPAASAPPPSSNAR 29
>AF101312-1|AAC69221.3| 813|Caenorhabditis elegans Hypothetical
protein F56E10.2 protein.
Length = 813
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 750 PPXCPXXGPPPXPPXPXSXXPP 815
PP CP PPP PP PP
Sbjct: 324 PPVCPPAPPPPPPPIGGLTSPP 345
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3
Query: 750 PPXCPXXGPPPXPPXPXSXXPP 815
PP CP PPP PP P PP
Sbjct: 68 PPICP---PPPPPPMPCPPPPP 86
>Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical
protein R102.6 protein.
Length = 324
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +3
Query: 750 PPXCPXXGPPPXPPXPXSXXPPFSXXRQXGAP 845
PP CP P P PP S PP + + P
Sbjct: 255 PPPCPMPIPCPPPPPACSCPPPVTMYQPCMVP 286
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 751 PPXAPXXAPXPGPXXXTPXXXPSPXP 828
PP P P P P TP P P P
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPP 289
>U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 2 protein.
Length = 380
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +1
Query: 742 WXXPPXAPXXAPXPGPXXXTPXXXPSPXP 828
W PP AP PGP T PS P
Sbjct: 272 WPGPPGAPGPGGMPGPNGPTGEQGPSGTP 300
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 751 PPXAPXXAPXPGPXXXTPXXXPSPXP 828
PP P P P P TP P P P
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPP 299
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +1
Query: 742 WXXPPXAPXXAPXPGPXXXTPXXXPSPXP 828
W PP AP PGP T PS P
Sbjct: 272 WPGPPGAPGPGGMPGPNGPTGEQGPSGTP 300
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,769,269
Number of Sequences: 27780
Number of extensions: 106278
Number of successful extensions: 941
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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