Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_K01
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    26   5.9  
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    26   5.9  

>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 334 NQLNSXQXXLINHYNESYKEKFGFPFIVCARENKVASILEGL 459
           N+LN  +   ++ Y E++ E     ++ C  EN  +S+ E L
Sbjct: 475 NELNEPEPDDMDGYKEAFNELRCLSYVQCLFENITSSLNENL 516


>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 427 ENKVASILEGLQIRLKNSSFQEYQTXLNEVKKICXYRIYD 546
           E+K+AS L+ + +       Q+Y T   EV + C   + D
Sbjct: 473 ESKIASFLQDVDLEKLGDRSQKYSTMYMEVWRQCSQNMLD 512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,698,317
Number of Sequences: 5004
Number of extensions: 24354
Number of successful extensions: 49
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)