Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_J23
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   176   3e-45
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   176   4e-45
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    26   8.1  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  176 bits (429), Expect = 3e-45
 Identities = 88/121 (72%), Positives = 101/121 (83%), Gaps = 1/121 (0%)
 Frame = +3

Query: 300 VLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTD 479
           VL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+IPGLTD
Sbjct: 67  VLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTD 126

Query: 480 GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPKIQRLVT 656
             VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK   KP  KAPKIQRLVT
Sbjct: 127 VTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRLVT 183

Query: 657 P 659
           P
Sbjct: 184 P 184



 Score = 92.3 bits (219), Expect = 8e-20
 Identities = 40/66 (60%), Positives = 48/66 (72%)
 Frame = +2

Query: 101 MXLNVSYPATGCQXLFEVVDXHKLRIFYEKRMGAEVEADQLGXEWKGYVLRVAGGNDKQG 280
           M LN+SYPA G Q L E+ D  +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 281 FPMKQG 298
           FPM QG
Sbjct: 61  FPMFQG 66


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  176 bits (428), Expect = 4e-45
 Identities = 87/121 (71%), Positives = 101/121 (83%), Gaps = 1/121 (0%)
 Frame = +3

Query: 300 VLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTD 479
           VL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+IPGLTD
Sbjct: 67  VLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTD 126

Query: 480 GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPKIQRLVT 656
             VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK   KP  KAPKIQRLVT
Sbjct: 127 VTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRLVT 183

Query: 657 P 659
           P
Sbjct: 184 P 184



 Score = 92.3 bits (219), Expect = 8e-20
 Identities = 40/66 (60%), Positives = 48/66 (72%)
 Frame = +2

Query: 101 MXLNVSYPATGCQXLFEVVDXHKLRIFYEKRMGAEVEADQLGXEWKGYVLRVAGGNDKQG 280
           M LN+SYPA G Q L E+ D  +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 281 FPMKQG 298
           FPM QG
Sbjct: 61  FPMFQG 66


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = -1

Query: 614 SIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNN 435
           S+ FS  G   A       +I + K E +   GSTFG   +G       R++   L H+N
Sbjct: 79  SVRFSPNGQYLASGSDDRVVIIWHKEEAIPGLGSTFG---SGEKHTENWRSYRRLLGHDN 135

Query: 434 KSQD 423
             QD
Sbjct: 136 DIQD 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,408
Number of Sequences: 5004
Number of extensions: 53071
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)