Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_J21
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    28   1.6  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    26   8.3  

>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 655 PASREFTVATCPSLILKSSLMAEDNRPPENMXPS-TNTLHM 536
           P SR   V   PSL L SS++A  +  P N+  +  NTLH+
Sbjct: 69  PKSRSEKVVYTPSLPLSSSVLASFSFLPHNILQNGLNTLHI 109


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 530 VFHVQCIS*WXHILWRSVVLCHQ 598
           VFH QCI  W   +  S  LC++
Sbjct: 226 VFHTQCIDTWMTTMKASCPLCNE 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,406,775
Number of Sequences: 5004
Number of extensions: 39887
Number of successful extensions: 76
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)