Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_J18
         (909 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 12/41 (29%), Positives = 13/41 (31%)
 Frame = +3

Query: 705 PXXPPPXXXPXPPRXXXPGGGXXPPXPXXXPXXPXPPXXPP 827
           P    P   P P +         PP P   P    PP  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 6/34 (17%)
 Frame = +2

Query: 770 PXPXPXXXPRXPX------PPXXPPXGXPPXXXP 853
           P P P   P+ P       P   PP G PP   P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 13/43 (30%), Positives = 13/43 (30%)
 Frame = +2

Query: 629 GXXSXGPPPXXXPXXXXGPGGGVXPPXXPPPXXXPXXPPXXXP 757
           G     P P   P      G    P   PPP   P  PP   P
Sbjct: 19  GAPGPQPSPHQSPQAPQR-GSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/37 (29%), Positives = 11/37 (29%)
 Frame = +3

Query: 714 PPPXXXPXPPRXXXPGGGXXPPXPXXXPXXPXPPXXP 824
           PP    P PP          PP P      P  P  P
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMP 446



 Score = 22.6 bits (46), Expect = 5.1
 Identities = 13/40 (32%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
 Frame = +2

Query: 683 PGGGVXPPXXP--PPXXXPXXPPXXXPXGGXPXPXPXXXP 796
           PG    P   P  P    P  P    P GG P   P   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/38 (26%), Positives = 11/38 (28%)
 Frame = +2

Query: 584 PXGGXXXPPXNGXPXGXXSXGPPPXXXPXXXXGPGGGV 697
           P  G    P  G P G     PP          P  G+
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASGI 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,907
Number of Sequences: 438
Number of extensions: 7484
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)