Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_J16
         (886 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X73459-1|CAA51838.1|  136|Homo sapiens signal recognition partic...    52   4e-06
U07857-1|AAA59066.1|  136|Homo sapiens 18 kDa Alu RNA binding pr...    52   4e-06
BC100031-1|AAI00032.1|  136|Homo sapiens signal recognition part...    52   4e-06
BC071716-1|AAH71716.1|  136|Homo sapiens signal recognition part...    52   4e-06
BC035495-1|AAH35495.1|  136|Homo sapiens signal recognition part...    52   4e-06
AB061546-1|BAB69067.1|  136|Homo sapiens signal recognition part...    52   4e-06

>X73459-1|CAA51838.1|  136|Homo sapiens signal recognition particle
           subunit 14 protein.
          Length = 136

 Score = 51.6 bits (118), Expect = 4e-06
 Identities = 33/95 (34%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
 Frame = +3

Query: 189 VXLXXXXFLAXXXXLFXXARXAGSXXXXXXXXXGRSXPMPRXGXPAVXXP-EYXCLLRAX 365
           V L    FL     LF   R +GS         GR+ P+P+ G      P +  CLLRA 
Sbjct: 2   VLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRAT 61

Query: 366 SKXXXXSXVVXXRXVXXFSTAYSNLLKXXVXGLXR 470
                 S VV  + V  F  AYSNLL+  + GL +
Sbjct: 62  DGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKK 96


>U07857-1|AAA59066.1|  136|Homo sapiens 18 kDa Alu RNA binding
           protein protein.
          Length = 136

 Score = 51.6 bits (118), Expect = 4e-06
 Identities = 33/95 (34%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
 Frame = +3

Query: 189 VXLXXXXFLAXXXXLFXXARXAGSXXXXXXXXXGRSXPMPRXGXPAVXXP-EYXCLLRAX 365
           V L    FL     LF   R +GS         GR+ P+P+ G      P +  CLLRA 
Sbjct: 2   VLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRAT 61

Query: 366 SKXXXXSXVVXXRXVXXFSTAYSNLLKXXVXGLXR 470
                 S VV  + V  F  AYSNLL+  + GL +
Sbjct: 62  DGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKK 96


>BC100031-1|AAI00032.1|  136|Homo sapiens signal recognition
           particle 14kDa (homologous Alu RNA binding protein)
           protein.
          Length = 136

 Score = 51.6 bits (118), Expect = 4e-06
 Identities = 33/95 (34%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
 Frame = +3

Query: 189 VXLXXXXFLAXXXXLFXXARXAGSXXXXXXXXXGRSXPMPRXGXPAVXXP-EYXCLLRAX 365
           V L    FL     LF   R +GS         GR+ P+P+ G      P +  CLLRA 
Sbjct: 2   VLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRAT 61

Query: 366 SKXXXXSXVVXXRXVXXFSTAYSNLLKXXVXGLXR 470
                 S VV  + V  F  AYSNLL+  + GL +
Sbjct: 62  DGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKK 96


>BC071716-1|AAH71716.1|  136|Homo sapiens signal recognition
           particle 14kDa (homologous Alu RNA binding protein)
           protein.
          Length = 136

 Score = 51.6 bits (118), Expect = 4e-06
 Identities = 33/95 (34%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
 Frame = +3

Query: 189 VXLXXXXFLAXXXXLFXXARXAGSXXXXXXXXXGRSXPMPRXGXPAVXXP-EYXCLLRAX 365
           V L    FL     LF   R +GS         GR+ P+P+ G      P +  CLLRA 
Sbjct: 2   VLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRAT 61

Query: 366 SKXXXXSXVVXXRXVXXFSTAYSNLLKXXVXGLXR 470
                 S VV  + V  F  AYSNLL+  + GL +
Sbjct: 62  DGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKK 96


>BC035495-1|AAH35495.1|  136|Homo sapiens signal recognition
           particle 14kDa (homologous Alu RNA binding protein)
           protein.
          Length = 136

 Score = 51.6 bits (118), Expect = 4e-06
 Identities = 33/95 (34%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
 Frame = +3

Query: 189 VXLXXXXFLAXXXXLFXXARXAGSXXXXXXXXXGRSXPMPRXGXPAVXXP-EYXCLLRAX 365
           V L    FL     LF   R +GS         GR+ P+P+ G      P +  CLLRA 
Sbjct: 2   VLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRAT 61

Query: 366 SKXXXXSXVVXXRXVXXFSTAYSNLLKXXVXGLXR 470
                 S VV  + V  F  AYSNLL+  + GL +
Sbjct: 62  DGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKK 96


>AB061546-1|BAB69067.1|  136|Homo sapiens signal recognition
           particle 14kD protein.
          Length = 136

 Score = 51.6 bits (118), Expect = 4e-06
 Identities = 33/95 (34%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
 Frame = +3

Query: 189 VXLXXXXFLAXXXXLFXXARXAGSXXXXXXXXXGRSXPMPRXGXPAVXXP-EYXCLLRAX 365
           V L    FL     LF   R +GS         GR+ P+P+ G      P +  CLLRA 
Sbjct: 2   VLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRAT 61

Query: 366 SKXXXXSXVVXXRXVXXFSTAYSNLLKXXVXGLXR 470
                 S VV  + V  F  AYSNLL+  + GL +
Sbjct: 62  DGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKK 96


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,585,276
Number of Sequences: 237096
Number of extensions: 336500
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11326166088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)