Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_J14
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    28   1.5  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    27   4.7  

>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 713 FVHGGLKVPVVFEGVXGAITVDDTVIT 633
           F H  +    V  G+ GAIT+DD++IT
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSIIT 133


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
 Frame = -2

Query: 510 SLESPNXIXLXFXXSINLRA*XSLLFMSLTVCSVKITLNWMGK*DLT-ISFPSFVHNW*A 334
           S  + N I L    S+N  +  + L + +++ + K  +  MG  +LT + F S   N+  
Sbjct: 40  SKRNTNRIMLSVVSSLNPDSLIAPL-LCVSLDNRKYLIGSMG--ELTQMKFRSQASNYGG 96

Query: 333 KSM-VFLLPFSIRRFTASLITAPCFXFRDSEHLARA-GADAP 214
           KS+ VFL+P S++   A  ITA  F +  S  +    G  AP
Sbjct: 97  KSVSVFLMPPSLQSLNAWGITAGLFGYLQSSGIQNTWGLHAP 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,579,857
Number of Sequences: 5004
Number of extensions: 42594
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)