Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_J13
         (867 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0164 - 9078814-9079908                                           29   4.8  
11_01_0594 - 4731112-4731444                                           29   6.4  
08_02_0640 - 19636968-19638230                                         28   8.4  

>05_03_0164 - 9078814-9079908
          Length = 364

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 367 VLGPGGDSTNYGGRLDWANKNAQATIXLNRQIGGRSGMTASGSGVWDLDKNXHFSAGGMV 546
           V+G  G +++    LD+ +  A A +  NR+ G ++     G  +  L  N H S G   
Sbjct: 85  VVGDAGATSDGLLLLDFTDIRATARVVANRRAGAQAQAQQQGKKLTGLSFNLHNSRGDTQ 144

Query: 547 SKEFG--HKRPDV 579
            +E    +  PD+
Sbjct: 145 ERELAGVNTNPDI 157


>11_01_0594 - 4731112-4731444
          Length = 110

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 532 AGGMVSKEFGHKRPDVGLQ-AEIRHDW*SPQHLYNNLLPXMSKF 660
           +GG+ S + G +   +  +  ++  +    + LYNN+LP MSK+
Sbjct: 53  SGGVESSDMGDENEQLRWEDVQLARELSQTRKLYNNILPLMSKY 96


>08_02_0640 - 19636968-19638230
          Length = 420

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 508 DPTHRSLMLSSQICHRFVYLXQ*WLVHSCSPSLGVRRSWCCRL 380
           DPT  S++++           + +LV SC   L VRR  CCR+
Sbjct: 266 DPTWSSVLITDDDDTSTTDKKKLYLVESCGVLLMVRRKVCCRV 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,720,953
Number of Sequences: 37544
Number of extensions: 347049
Number of successful extensions: 828
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)