Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_J12
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   167   1e-42
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   162   5e-41

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  167 bits (407), Expect = 1e-42
 Identities = 90/170 (52%), Positives = 100/170 (58%)
 Frame = +1

Query: 313 LXVNGXXIAVFSERXPKAXPWGXAGAEYVVESTGVFTTTDXASAHLEGGAKKVIISAPSA 492
           L ++G  I V +ER P    W  +GAEYV+ESTGVFTT + ASAHL+GGAK+VIISAPS 
Sbjct: 67  LVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAPSK 126

Query: 493 DAPXFVVGVXLEAYDPSFKVXSNASCTTXCLAPLAXVIXDXFXIVXGLMXXXXXXXXXXX 672
           DAP FVVGV LE ++PS KV SNASCTT CLAPLA VI D F I  GLM           
Sbjct: 127 DAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTATQK 186

Query: 673 XXDGPSGXLWRXGRGXXXXXXXXXXXXXXXXXXXXXXLNGXLXXMAFPVP 822
             DGPS   WR GRG                      LNG L  MAF VP
Sbjct: 187 TVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPALNGKLTGMAFRVP 236



 Score = 65.7 bits (153), Expect = 8e-12
 Identities = 32/51 (62%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
 Frame = +3

Query: 165 LVLRASIEKGAX-VVAINDPFIGLDYMVYLFKYDSXHGRFKGXVEVXXGFL 314
           +VLR +I  G   VVA+NDPFI LDYM Y+FKYDS HGRF+G VE   G L
Sbjct: 17  IVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKGGKL 67


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  162 bits (394), Expect = 5e-41
 Identities = 87/170 (51%), Positives = 99/170 (58%)
 Frame = +1

Query: 313 LXVNGXXIAVFSERXPKAXPWGXAGAEYVVESTGVFTTTDXASAHLEGGAKKVIISAPSA 492
           L ++G  I V +ER P    W  +GA+YV+ESTGVFTT + ASAHL+GGAK+VIISAPS 
Sbjct: 67  LVIDGNAIDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAPSK 126

Query: 493 DAPXFVVGVXLEAYDPSFKVXSNASCTTXCLAPLAXVIXDXFXIVXGLMXXXXXXXXXXX 672
           DAP +VVGV  E ++PS KV SNASCTT CLAPLA VI D F I  GLM           
Sbjct: 127 DAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTATQK 186

Query: 673 XXDGPSGXLWRXGRGXXXXXXXXXXXXXXXXXXXXXXLNGXLXXMAFPVP 822
             DGPS   WR GRG                      LNG L  MAF VP
Sbjct: 187 TVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPALNGKLTGMAFRVP 236



 Score = 65.7 bits (153), Expect = 8e-12
 Identities = 32/51 (62%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
 Frame = +3

Query: 165 LVLR-ASIEKGAXVVAINDPFIGLDYMVYLFKYDSXHGRFKGXVEVXXGFL 314
           +VLR A + K   VVAINDPFI L+YM Y+FKYDS HGRF G VE+  G L
Sbjct: 17  IVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKDGKL 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,401
Number of Sequences: 5004
Number of extensions: 27848
Number of successful extensions: 62
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)