Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_J12
(854 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0533 + 3868230-3868564,3869040-3869098,3869187-3869225,386... 175 4e-44
06_03_1052 - 27217792-27217846,27218025-27218114,27218191-272182... 172 3e-43
04_04_0306 + 24280773-24280776,24280906-24280929,24281023-242811... 160 1e-39
08_01_0179 + 1519141-1519144,1519278-1519301,1519417-1519517,151... 151 9e-37
02_04_0507 + 23546911-23546953,23547011-23547111,23547695-235478... 144 1e-34
04_04_0120 + 22911863-22911904,22912002-22912112,22912212-229127... 111 7e-25
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164... 97 2e-20
>02_01_0533 +
3868230-3868564,3869040-3869098,3869187-3869225,
3869629-3869729,3870288-3870400,3870976-3871075,
3871170-3871316,3871442-3871502,3871616-3871713,
3871786-3871928,3872221-3872304,3872389-3872478,
3872574-3872628
Length = 474
Score = 175 bits (426), Expect = 4e-44
Identities = 90/171 (52%), Positives = 103/171 (60%)
Frame = +1
Query: 310 SLXVNGXXIAVFSERXPKAXPWGXAGAEYVVESTGVFTTTDXASAHLEGGAKKVIISAPS 489
+L +NG + + S+R P PWG GAEYVVES+GVFTTT+ ASAHL+GGAKKV+ISAPS
Sbjct: 202 TLEINGKKVTITSKRDPADIPWGNFGAEYVVESSGVFTTTEKASAHLKGGAKKVVISAPS 261
Query: 490 ADAPXFVVGVXLEAYDPSFKVXSNASCTTXCLAPLAXVIXDXFXIVXGLMXXXXXXXXXX 669
ADAP FVVGV ++YDP V SNASCTT CLAPLA V+ + F IV GLM
Sbjct: 262 ADAPMFVVGVNEKSYDPKMNVVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQ 321
Query: 670 XXXDGPSGXLWRXGRGXXXXXXXXXXXXXXXXXXXXXXLNGXLXXMAFPVP 822
DGPS WR GRG LNG L MAF VP
Sbjct: 322 KTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVP 372
Score = 56.4 bits (130), Expect = 3e-08
Identities = 27/46 (58%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = +3
Query: 165 LVLR-ASIEKGAXVVAINDPFIGLDYMVYLFKYDSXHGRFKGXVEV 299
LVLR A+ VVA+NDPFI YM Y+FKYDS HG FKG ++V
Sbjct: 152 LVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGPFKGSIKV 197
>06_03_1052 -
27217792-27217846,27218025-27218114,27218191-27218274,
27218526-27218668,27218748-27218845,27218959-27219019,
27219184-27219330,27219428-27219527,27219701-27219813,
27220302-27220402,27220614-27220652,27220739-27220797,
27221027-27221088,27221411-27221506
Length = 415
Score = 172 bits (418), Expect = 3e-43
Identities = 89/171 (52%), Positives = 103/171 (60%)
Frame = +1
Query: 310 SLXVNGXXIAVFSERXPKAXPWGXAGAEYVVESTGVFTTTDXASAHLEGGAKKVIISAPS 489
+L +NG I+V S+R P PWG GAEYVVES+GVFTTT+ ASAHL+GGA+KV+ISAPS
Sbjct: 143 TLEINGKKISVTSKRDPSDIPWGNFGAEYVVESSGVFTTTEKASAHLKGGARKVVISAPS 202
Query: 490 ADAPXFVVGVXLEAYDPSFKVXSNASCTTXCLAPLAXVIXDXFXIVXGLMXXXXXXXXXX 669
ADAP FVVGV + Y+PS V SNASCTT CLAPLA ++ + F I GLM
Sbjct: 203 ADAPMFVVGVNEKNYNPSMNVVSNASCTTNCLAPLAKIVHEEFGIAEGLMTTVHATTATQ 262
Query: 670 XXXDGPSGXLWRXGRGXXXXXXXXXXXXXXXXXXXXXXLNGXLXXMAFPVP 822
DGPS WR GRG LNG L MAF VP
Sbjct: 263 KTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVP 313
Score = 56.0 bits (129), Expect = 4e-08
Identities = 26/46 (56%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = +3
Query: 165 LVLRASIEKG-AXVVAINDPFIGLDYMVYLFKYDSXHGRFKGXVEV 299
LVLR + + VVA+NDPFI YM Y+FKYDS HG FKG ++V
Sbjct: 93 LVLRIATNRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGPFKGTIKV 138
>04_04_0306 +
24280773-24280776,24280906-24280929,24281023-24281123,
24281359-24281502,24281667-24281782,24281869-24281968,
24282068-24282214,24282329-24282389,24282480-24282577,
24283118-24283260,24283374-24283457,24283538-24283627,
24284018-24284063
Length = 385
Score = 160 bits (389), Expect = 1e-39
Identities = 84/163 (51%), Positives = 92/163 (56%)
Frame = +1
Query: 334 IAVFSERXPKAXPWGXAGAEYVVESTGVFTTTDXASAHLEGGAKKVIISAPSADAPXFVV 513
+ VF R P+ PWG GAE+VVESTGVFT D A+AHL+GGAKKV+ISAPS DAP FVV
Sbjct: 124 VTVFGCRNPEEIPWGETGAEFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVV 183
Query: 514 GVXLEAYDPSFKVXSNASCTTXCLAPLAXVIXDXFXIVXGLMXXXXXXXXXXXXXDGPSG 693
GV + Y P + SNASCTT CLAPLA VI D F IV GLM DGPS
Sbjct: 184 GVNEKEYKPDIDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSS 243
Query: 694 XLWRXGRGXXXXXXXXXXXXXXXXXXXXXXLNGXLXXMAFPVP 822
WR GR LNG L MAF VP
Sbjct: 244 KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVP 286
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 165 LVLRASIEKG-AXVVAINDPFIGLDYMVYLF 254
LV R +++ +VA+NDPFI DYM+ F
Sbjct: 17 LVARVALQSDDVELVAVNDPFITTDYMICEF 47
>08_01_0179 +
1519141-1519144,1519278-1519301,1519417-1519517,
1519805-1519920,1519944-1520112,1520713-1520859,
1520943-1521003,1521086-1521183,1521608-1521750,
1521980-1522063,1522191-1522280,1522375-1522420
Length = 360
Score = 151 bits (365), Expect = 9e-37
Identities = 79/158 (50%), Positives = 87/158 (55%)
Frame = +1
Query: 349 ERXPKAXPWGXAGAEYVVESTGVFTTTDXASAHLEGGAKKVIISAPSADAPXFVVGVXLE 528
ER P PW AGAEYVVESTGVFT + A+AHL+GGAKKV+ISAPS DAP FV GV +
Sbjct: 104 ERNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNED 163
Query: 529 AYDPSFKVXSNASCTTXCLAPLAXVIXDXFXIVXGLMXXXXXXXXXXXXXDGPSGXLWRX 708
Y + SNASCTT CLAPLA VI D F I+ GLM DGPS WR
Sbjct: 164 KYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHAITATQKTVDGPSSKDWRG 223
Query: 709 GRGXXXXXXXXXXXXXXXXXXXXXXLNGXLXXMAFPVP 822
GR LNG L M+F VP
Sbjct: 224 GRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVP 261
Score = 50.4 bits (115), Expect = 2e-06
Identities = 21/41 (51%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Frame = +3
Query: 165 LVLRASIE-KGAXVVAINDPFIGLDYMVYLFKYDSXHGRFK 284
LV R +++ + +VA+NDPFI DYM Y+FKYD+ HG++K
Sbjct: 17 LVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWK 57
>02_04_0507 +
23546911-23546953,23547011-23547111,23547695-23547810,
23547897-23547996,23548027-23548215,23548303-23548363,
23548469-23548566,23548943-23549085,23549228-23549311,
23549423-23549512,23549599-23549644
Length = 356
Score = 144 bits (348), Expect = 1e-34
Identities = 85/177 (48%), Positives = 92/177 (51%), Gaps = 14/177 (7%)
Frame = +1
Query: 334 IAVFSERXPKAXPWGXAGAEYVVESTGVFTTTDXASAHL--------------EGGAKKV 471
+AVF R P+ PW AGAEYVVESTGVFT D A+AHL +GGAKKV
Sbjct: 81 VAVFGCRNPEEIPWAAAGAEYVVESTGVFTDKDKAAAHLKGQAVDLFSIIFHMQGGAKKV 140
Query: 472 IISAPSADAPXFVVGVXLEAYDPSFKVXSNASCTTXCLAPLAXVIXDXFXIVXGLMXXXX 651
+ISAPS DAP FVVGV + Y + SNASCTT CLAPLA VI D F IV GLM
Sbjct: 141 VISAPSKDAPMFVVGVNEKEYKSDVNIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVH 200
Query: 652 XXXXXXXXXDGPSGXLWRXGRGXXXXXXXXXXXXXXXXXXXXXXLNGXLXXMAFPVP 822
DGPS WR GR LNG L MAF VP
Sbjct: 201 AITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVP 257
Score = 48.8 bits (111), Expect = 5e-06
Identities = 20/41 (48%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Frame = +3
Query: 165 LVLRASIE-KGAXVVAINDPFIGLDYMVYLFKYDSXHGRFK 284
LV R +++ + +VA+NDPFI +YM Y+FKYD+ HG++K
Sbjct: 22 LVARVALQSEDVELVAVNDPFITTEYMTYMFKYDTVHGQWK 62
>04_04_0120 +
22911863-22911904,22912002-22912112,22912212-22912764,
22912852-22913354
Length = 402
Score = 111 bits (267), Expect = 7e-25
Identities = 51/111 (45%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Frame = +1
Query: 310 SLXVNGXXIAVFSERXPKAXPWGXAGAEYVVESTGVFTTTDXASAHLEGGAKKVIISAP- 486
++ V+G I V S+R P PWG G + V+E TGVF D A H++ GAKKV+I+AP
Sbjct: 132 AISVDGKVIKVVSDRNPSNLPWGELGIDLVIEGTGVFVDRDGAGKHIQAGAKKVLITAPG 191
Query: 487 SADAPXFVVGVXLEAYDPSFKVXSNASCTTXCLAPLAXVIXDXFXIVXGLM 639
D P +VVGV + Y P + SNASCTT CLAP ++ F I+ G M
Sbjct: 192 KGDIPTYVVGVNADQYSPDEPIISNASCTTNCLAPFVKILDQKFGIIKGTM 242
>03_01_0208 +
1642041-1642118,1642200-1642310,1643157-1643318,
1643433-1643600,1643683-1643843,1643930-1643991,
1644078-1644127,1644247-1644653,1644760-1644895
Length = 444
Score = 97.1 bits (231), Expect = 2e-20
Identities = 50/113 (44%), Positives = 65/113 (57%), Gaps = 3/113 (2%)
Frame = +1
Query: 310 SLXVNGXXIAVFSERXPKAXPWGXAGAEYVVESTGVFTTTDXASAHLEGGAKKVIISAPS 489
++ V+G I V S R P PW G + V+E TGVF A H++ GAKKVII+AP+
Sbjct: 142 TISVDGKLIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 201
Query: 490 --ADAPXFVVGVXLEAYDPSF-KVXSNASCTTXCLAPLAXVIXDXFXIVXGLM 639
AD P +V+GV Y + SNASCTT CLAP ++ + F IV G M
Sbjct: 202 KGADIPTYVLGVNEGDYSHEVANIISNASCTTNCLAPFVKILDEEFGIVKGTM 254
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,917,428
Number of Sequences: 37544
Number of extensions: 208818
Number of successful extensions: 347
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -