Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_J10
(888 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 62 1e-10
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 34 0.024
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.080
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 32 0.13
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 31 0.29
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 2.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.7
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 2.7
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 2.7
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 62.1 bits (144), Expect = 1e-10
Identities = 31/80 (38%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +2
Query: 230 SKPIAMSSSVCYKCNRTGHFARECTXGGVVSRDS-GFNRQREXCFKCHRTGXFARDCXEE 406
S P + CYKC R GH AR+C G S G +R C+ C G ARDC
Sbjct: 75 SSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG 134
Query: 407 ADRCYRCXGTGHIARECAQS 466
+CY C GH + EC Q+
Sbjct: 135 V-KCYSCGKIGHRSFECQQA 153
Score = 58.4 bits (135), Expect = 1e-09
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +2
Query: 254 SVCYKCNRTGHFARECTXGGVVSRDSGFNRQREXCFKCHRTGXFARDC-----XEEADRC 418
S+CY CN+TGH A ECT +Q + C+ C G RDC + C
Sbjct: 36 SICYNCNQTGHKASECTE----------PQQEKTCYACGTAGHLVRDCPSSPNPRQGAEC 85
Query: 419 YRCXGTGHIAREC 457
Y+C GHIAR+C
Sbjct: 86 YKCGRVGHIARDC 98
Score = 58.0 bits (134), Expect = 2e-09
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +2
Query: 260 CYKCNRTGHFARECTXGGVVSRDSGFNRQREXCFKCHRTGXFARDCXE--EADRCYRCXG 433
CY C GH ARECT G + C+ C++TG A +C E + CY C
Sbjct: 19 CYNCGENGHQARECTKGSI-------------CYNCNQTGHKASECTEPQQEKTCYACGT 65
Query: 434 TGHIARECAQSP 469
GH+ R+C SP
Sbjct: 66 AGHLVRDCPSSP 77
Score = 31.9 bits (69), Expect = 0.13
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 242 AMSSSVCYKCNRTGHFARECT 304
A +CYKCN+ GH A CT
Sbjct: 153 ASDGQLCYKCNQPGHIAVNCT 173
Score = 29.1 bits (62), Expect = 0.88
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 413 RCYRCXGTGHIARECAQ 463
RCY C GH AREC +
Sbjct: 18 RCYNCGENGHQARECTK 34
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 34.3 bits (75), Expect = 0.024
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +2
Query: 338 NRQREXCFKCHRTGXFARDCXEEADR---CYRCXGTGHIARECAQ 463
NR + CF C + G +DC E D C+RC H C++
Sbjct: 74 NRDK-FCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSK 117
Score = 34.3 bits (75), Expect = 0.024
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +2
Query: 260 CYKCNRTGHFARECTXGGVVSRDSGFNRQREXCFKCHRTGXFARDCXEEAD----RCYRC 427
C+ C + GH ++C ++D+ CF+C C ++ +C+ C
Sbjct: 79 CFACRQQGHIVQDCPE----AKDNV-----SICFRCGSKEHSLNACSKKGPLKFAKCFIC 129
Query: 428 XGTGHIARECAQSP 469
GH++ +C Q+P
Sbjct: 130 HENGHLSGQCEQNP 143
Score = 32.7 bits (71), Expect = 0.072
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Frame = +2
Query: 254 SVCYKCNRTGHFARECTXGGVVSRDSGFNRQREXCFKCHRTGXFARDCXE-------EAD 412
S+C++C H C+ G + F + CF CH G + C + +
Sbjct: 100 SICFRCGSKEHSLNACSKKGPLK----FAK----CFICHENGHLSGQCEQNPKGLYPKGG 151
Query: 413 RCYRCXGTGHIARECAQ 463
C C H+A++C Q
Sbjct: 152 CCKFCSSVHHLAKDCDQ 168
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 29.1 bits (62), Expect(2) = 0.080
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 356 CFKCHRTGXFARDCXEEADRCYRCXGTGHIARECAQSPGRAVM 484
C+KCH TG +D RC R G + + PG V+
Sbjct: 143 CYKCHNTGY--KDSGRPCGRCARRFGRSYDVQFSRPPPGALVV 183
Score = 22.2 bits (45), Expect(2) = 0.080
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = +2
Query: 257 VCYKCNRTGH 286
+CYKC+ TG+
Sbjct: 142 MCYKCHNTGY 151
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 31.9 bits (69), Expect = 0.13
Identities = 21/79 (26%), Positives = 28/79 (35%), Gaps = 10/79 (12%)
Frame = +2
Query: 251 SSVCYKCNRTGHFAREC------TXGGVVSRDSGFNRQREXCFKCHRTGXFARDCXEEAD 412
S VC+ C GH +++C T G + S + C C G A C E
Sbjct: 86 SIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRK 145
Query: 413 R----CYRCXGTGHIAREC 457
R C C H + C
Sbjct: 146 RGPRVCRTCHTDTHTSSTC 164
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 30.7 bits (66), Expect = 0.29
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Frame = +2
Query: 344 QREXCFKCHRTGXFARDCXEEADR-----CYRCXGTGHIAREC 457
+ + C C G DC E + C C GHIAR+C
Sbjct: 307 ENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDC 349
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/52 (30%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Frame = +1
Query: 712 PLXXPXXPXFFFFXXPPPXXXKPX---GXPPPXPPXXPVXXXXXSXXGXPXP 858
P P P PPP P PPP PP P S P P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 2.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 757 PPPXXXKPXGXPPPXPP 807
PPP +P PPP PP
Sbjct: 13 PPPPGFEPPSQPPPPPP 29
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +1
Query: 757 PPPXXXKPXGXPPPXPP 807
PPP P PPP PP
Sbjct: 14 PPPGFEPPSQPPPPPPP 30
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 2.7
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 254 SVCYKCNRTGHFAREC 301
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 2.7
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 254 SVCYKCNRTGHFAREC 301
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,209,667
Number of Sequences: 5004
Number of extensions: 32142
Number of successful extensions: 110
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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