Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_J07
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    27   2.6  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    27   3.4  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   6.0  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   7.9  

>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 355 PEKKPLIRPEKPEEVRAKVRRGSQK 429
           P KKPL+ P  P+E    +RR  Q+
Sbjct: 288 PPKKPLVSPILPKEAELDLRRNLQR 312


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = +1

Query: 343 RMKAPEKKPLIRPEKPEEVRAKVRRGSQKKQPSPIHALAEFQSPADSV*VQKSIEIXIEN 522
           + KAP KK  ++P K EE +  V   ++  + S + +     SP  +     S+++   N
Sbjct: 506 KAKAPTKKSKVKPSKQEESKVVVPSNAKAVKKSVVPSSPVVPSPRKATNKSLSMDVSKGN 565

Query: 523 VLK 531
             +
Sbjct: 566 AFE 568


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 22/56 (39%), Positives = 27/56 (48%)
 Frame = -3

Query: 431 FFWLPRRTFALTSSGFSGLMRGFFSGAFMRQTTIGDAMVPWRVYLVEATYEAFTVS 264
           FF L    FAL  S FS  +  FFS  + RQT I      W V+ +  TY A  +S
Sbjct: 138 FFVLLAYDFALRKSAFSSSVSCFFS-LWFRQTNI-----VWMVF-IAVTYFASNMS 186


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +1

Query: 373  IRPEKPEEVRAKVRRGSQKKQPSPIHALAEFQS--PADSV*VQKSIEI 510
            I  E+ EE+ ++ RR S +K    I    EFQ     +S+ VQK + I
Sbjct: 1240 IMTEQKEEIESQKRRSSFRKTIEEIQQEEEFQKWWEEESLRVQKELGI 1287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,499
Number of Sequences: 5004
Number of extensions: 42100
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)