Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_J06
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.7  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    26   6.2  

>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 629 FPWSLMSVTAPCFLQSTCSGSFTLAGDMN 543
           +PWS   V    +L     G F LAGD N
Sbjct: 399 YPWSQPVVNITDYLSDNGDGHFVLAGDGN 427


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/73 (17%), Positives = 34/73 (46%)
 Frame = +3

Query: 288 KLQHRLNYESEVEDNFRMKIYAEHKHIIAKHNQKYEMGLXFLQAGHEQVRRHAPPRVRED 467
           K QH +     + D F  K+  +  ++ A  N+ Y+  + +L+   E +   +   + + 
Sbjct: 245 KYQHPVRSLLNLIDKFIDKLSEQSGNVTADTNEHYDRAMQYLKQLVENILNRSLDNLIDT 304

Query: 468 YERLQQNCQTQQE 506
            +++Q + +  +E
Sbjct: 305 LKQVQHDAENDEE 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,352
Number of Sequences: 5004
Number of extensions: 51914
Number of successful extensions: 148
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)