Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_J02
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    48   1e-06
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    33   0.054
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    33   0.072

>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 27/96 (28%), Positives = 46/96 (47%)
 Frame = +3

Query: 219 YLXGXSVASSXPXWXXLTNPATXEVIGRVPXATQXXLTSALDXXXXXXXXXXXXTVLTRQ 398
           ++ G  ++S       + NPAT E+IG+V   +      A+             T + R 
Sbjct: 21  FVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAFKTYKNFTHVQRS 80

Query: 399 QLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDV 506
           QL+ ++A L+ EN+  L   +T E GK ++ AE +V
Sbjct: 81  QLLERWAELIMENKDDLVKMLTLENGKPLSQAEMEV 116


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 33.1 bits (72), Expect = 0.054
 Identities = 29/140 (20%), Positives = 48/140 (34%)
 Frame = +3

Query: 393 RQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLGDSI 572
           R + + + A  + +N   LA+  T + GK+I  A GDV        +         G +I
Sbjct: 87  RGRCLSRLADCIEQNLEYLASIETLDNGKSITLARGDVQAAADCFRYYGGWADKDYGQTI 146

Query: 573 QNIXKDMDTHSYKVPLGSCWRCCSLQFXXXXXXXXXXXXXXXXNTCIIXPSXQDPGAXXX 752
           +   K    ++   P+G C +     F                NT I+  +   P +   
Sbjct: 147 ETDIKRF-AYTRHEPIGVCGQIIPWNFPFLMCAWKIAPAVACGNTIILKTAELTPLSALC 205

Query: 753 XXXXXXXXXAPPGXXNXIXG 812
                     PPG  N + G
Sbjct: 206 LTKFVPECGFPPGVINVLSG 225


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
 Frame = +3

Query: 201 APTXKLYLXGXSVASSXPXWXX--LTNPATXEVIGRVPXATQXXLTSALDXXXXXXXXXX 374
           AP   L++ G  V+   P      L NPAT E+IG    A+   + SA++          
Sbjct: 18  APENSLFIDGKFVSPIEPAAKPIPLINPATEEIIGTCANASAKDVDSAVENAYNTFRSGI 77

Query: 375 XXTVLTRQQ--LMFKFARLLRENQSKLAAKITEEQGKTIADAEGDV 506
                 +Q+  ++ K A+++RE +  LA   T   GK    A  D+
Sbjct: 78  WAKWPGKQRGLVLRKIAKMMREKRELLAGIDTINCGKPTPYALFDI 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,409,310
Number of Sequences: 5004
Number of extensions: 35840
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)