Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_J02
(887 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0637 + 4767021-4767083,4767175-4767249,4767339-4767500,476... 142 3e-34
06_03_0627 + 22903346-22903523,22906010-22906152,22906235-229066... 33 0.23
02_05_0620 - 30412004-30412429,30412509-30412646,30412729-304128... 31 1.6
01_05_0544 + 23098921-23098953,23099209-23099272,23099942-231000... 30 2.1
>07_01_0637 +
4767021-4767083,4767175-4767249,4767339-4767500,
4767624-4767702,4767922-4768076,4768225-4768288,
4768928-4769007,4769366-4769431,4769932-4769982,
4770087-4770238,4770270-4770287,4770323-4770413,
4771156-4771236,4771330-4771407,4772315-4772350,
4772425-4772468,4772567-4772645,4773035-4773125,
4773268-4773374
Length = 523
Score = 142 bits (344), Expect = 3e-34
Identities = 74/209 (35%), Positives = 100/209 (47%)
Frame = +3
Query: 204 PTXKLYLXGXSVASSXPXWXXLTNPATXEVIGRVPXATQXXLTSALDXXXXXXXXXXXXT 383
P +L + G V S +TNPAT EV+ R+P T +A+D
Sbjct: 22 PRVRLLIGGEFVESRADEHVDVTNPATQEVVSRIPLTTADEFRAAVDAARTAFPGWRNTP 81
Query: 384 VLTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLG 563
V TRQ++M K+ L+R N KLA IT EQGKT+ DA GDV RG++ VEH C + +LQ+G
Sbjct: 82 VTTRQRIMLKYQELIRANMDKLAENITTEQGKTLKDAWGDVFRGLEVVEHACGMGTLQMG 141
Query: 564 DSIQNIXKDMDTHSYKVPLGSCWRCCSLQFXXXXXXXXXXXXXXXXNTCIIXPSXQDPGA 743
+ + N+ +DT S + PLG C C F NT ++ PS +DPGA
Sbjct: 142 EYVSNVSNGIDTFSIREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFVLKPSEKDPGA 201
Query: 744 XXXXXXXXXXXXAPPGXXNXIXGXXGXVN 830
P G N + G VN
Sbjct: 202 AMMLAELAMEAGLPKGVLNIVHGTHDVVN 230
>06_03_0627 +
22903346-22903523,22906010-22906152,22906235-22906618,
22906980-22907069,22907147-22907320,22907414-22907551,
22907719-22907856,22907958-22908019,22908240-22908513
Length = 526
Score = 33.5 bits (73), Expect = 0.23
Identities = 37/203 (18%), Positives = 75/203 (36%), Gaps = 3/203 (1%)
Frame = +3
Query: 213 KLYLXGXSVASSXPXWXXLTNPATXEVIGRVPXATQXXLTSALDXXXXXXXXXXXXTVL- 389
KL++ G V ++ +P T +VI RV + + A+ +
Sbjct: 47 KLFINGRFVDAASGKTFETRDPRTGDVIARVAEGDKEDVDLAVKAAREAFDHGEWPRMSG 106
Query: 390 -TRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEG-DVLRGIQSVEHCCSITSLQLG 563
R ++M K+A ++ + +LAA + + GK +A A DV + + + G
Sbjct: 107 SERGRVMAKYAEVVERHADELAALESLDAGKPLAAARAVDVGECVGILRYFAGAADKIHG 166
Query: 564 DSIQNIXKDMDTHSYKVPLGSCWRCCSLQFXXXXXXXXXXXXXXXXNTCIIXPSXQDPGA 743
++++ + + + ++ + PLG F T ++ P+ Q P +
Sbjct: 167 ETLK-MSRQLQGYTLREPLGVAGLIVPWNFPAIMFFSKVSPALAAGCTVVVKPAEQTPLS 225
Query: 744 XXXXXXXXXXXXAPPGXXNXIXG 812
P G N + G
Sbjct: 226 ALFLAHLSKQAGVPDGVINVVTG 248
>02_05_0620 -
30412004-30412429,30412509-30412646,30412729-30412866,
30412966-30413139,30413211-30413684,30413775-30413917,
30414002-30414160,30414943-30415042
Length = 583
Score = 30.7 bits (66), Expect = 1.6
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Frame = +3
Query: 213 KLYLXGXSVASSXPXWXXLTNPATXEVIGRVPXATQXXLTSALDXXXXXXXXXXXX--TV 386
KL + G V ++ +P T +VI RV + A+ T
Sbjct: 74 KLLINGNFVDAASGKTFATVDPRTGDVIARVAEGDAEDVNRAVAAARRAFDEGPWPRMTA 133
Query: 387 LTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEG 500
R +++ +FA L+ ++ ++AA T + GKT+ G
Sbjct: 134 YERCRVLLRFADLIEQHADEIAALETWDGGKTLEQTTG 171
>01_05_0544 +
23098921-23098953,23099209-23099272,23099942-23100084,
23100246-23100719,23100950-23101123,23101230-23101367,
23101489-23101589,23101910-23102183
Length = 466
Score = 30.3 bits (65), Expect = 2.1
Identities = 32/183 (17%), Positives = 66/183 (36%), Gaps = 3/183 (1%)
Frame = +3
Query: 273 NPATXEVIGRVPXATQXXLTSALDXXXXXXXXXXXXTV--LTRQQLMFKFARLLRENQSK 446
+P T EVI ++ + + A+ + R +++ KFA L+ ++ +
Sbjct: 40 DPRTGEVIAKIAEGDKADIDLAVKAAREAFDHGPWPRMSGFARGRILHKFADLVEQHVEE 99
Query: 447 LAAKITEEQGKTIADAE-GDVLRGIQSVEHCCSITSLQLGDSIQNIXKDMDTHSYKVPLG 623
LAA T + GK A + D+ G + + G++++ + + ++ K P+G
Sbjct: 100 LAALDTVDAGKLFAMGKLVDIPGGANLLRYYAGAADKVHGETLK-MARPCHGYTLKEPVG 158
Query: 624 SCWRCCSLQFXXXXXXXXXXXXXXXXNTCIIXPSXQDPGAXXXXXXXXXXXXAPPGXXNX 803
+ T ++ P+ Q P + P G N
Sbjct: 159 VVGHIVPWNYPTTMFFFKASPALAAGCTMVVKPAEQTPLSALFYAHLAKLAGVPDGVLNV 218
Query: 804 IXG 812
+ G
Sbjct: 219 VPG 221
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,793,598
Number of Sequences: 37544
Number of extensions: 295937
Number of successful extensions: 1022
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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