Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_J01
         (990 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.1  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    26   7.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 20/66 (30%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
 Frame = -1

Query: 513 AVLXXRXXRPAPPXPGEKKXXRGGGXXWXGXPXXXXPPKPGDXPGXXQXXXXVP-PPXGG 337
           A L     RP PP P   +  RG      G      PP P   P        +P PP G 
Sbjct: 302 AALAANKKRPPPPPP-PSRRNRGKPPIGNGSSNSSLPPPP--PPPRSNAAGSIPLPPQGR 358

Query: 336 GGXPXP 319
              P P
Sbjct: 359 SAPPPP 364


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 14/47 (29%), Positives = 14/47 (29%)
 Frame = -2

Query: 395  PGTAPGXPKXGXXCPPPXGGGGXPXPXKXXXCGXXPPPPXKGXXXXP 255
            P  AP  PK     PP     G P   K        P P  G    P
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVP 1182



 Score = 26.2 bits (55), Expect = 7.1
 Identities = 15/40 (37%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
 Frame = -2

Query: 395  PGTAPGXPKXGXXCPP-PXGGGGXPXPXKXXXCGXXPPPP 279
            P  AP  PK     PP P    G P P      G  P PP
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIP-PVPKPAAGVPPVPP 1193


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -2

Query: 353 PPPXGGGGXPXPXKXXXCGXXPPPP 279
           P P  GG  P P      G  PPPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 926 GGXGGGGXPXGGXXRGGXGG 867
           GG GG     GG  RGG GG
Sbjct: 145 GGRGGSRGGFGGNSRGGFGG 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,255,965
Number of Sequences: 5004
Number of extensions: 17790
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)