Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_I23
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...   215   7e-57
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    29   0.66 
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    29   1.1  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    24   1.3  
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    28   2.0  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    27   3.5  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    26   6.1  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   8.1  

>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score =  215 bits (525), Expect = 7e-57
 Identities = 95/158 (60%), Positives = 120/158 (75%), Gaps = 2/158 (1%)
 Frame = +1

Query: 406 IICKNIPRLVTGWDKPIIIGRHAHADQYKATDFVVPGAGTLEIIFKPESGEAIKHV--VH 579
           I+ KNIP+ + GW  PI IGRHA  DQYK+TD V  G G LE+ F P+   + K    V+
Sbjct: 122 ILIKNIPKYIPGWTNPICIGRHAFGDQYKSTDLVASGPGKLELSFTPKGNPSAKETYNVY 181

Query: 580 EYKGAGVALAMFNTDASIIDFAHSSFKFALDRXYPLYLSTKNTILKKYDGRFKDIFQDIY 759
           E+ G+GVA++M+NTD SI  FAHSSF+ AL +  PLYLSTKNTILKKYDGRFKD FQ++Y
Sbjct: 182 EFNGSGVAMSMYNTDDSIRGFAHSSFQMALQKKMPLYLSTKNTILKKYDGRFKDTFQEVY 241

Query: 760 DREYXKQFEDAGIWYEHRLIDDMVAYAMKSXGGXVWAC 873
           + +Y ++FE+ G+WY+HRLIDDMVA A+KS GG VWAC
Sbjct: 242 ESDYKQKFEELGLWYQHRLIDDMVAQAIKSNGGFVWAC 279



 Score =  160 bits (389), Expect = 2e-40
 Identities = 71/101 (70%), Positives = 88/101 (87%)
 Frame = +3

Query: 96  PVVDILGXEMXRIIWDLIKEKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYN 275
           PVV++ G EM R+IW +I+EKL+LP++DI+L  YDLG+E RDKT+DQ+T+D A+AI K +
Sbjct: 19  PVVEMDGDEMTRVIWKIIREKLVLPYMDIKLDYYDLGIEARDKTNDQITVDAAKAILKND 78

Query: 276 VGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFR 398
           VGIKCATITPDE RV+E+ LKKMWKSPNGTIRNIL GTVFR
Sbjct: 79  VGIKCATITPDEARVKEYNLKKMWKSPNGTIRNILNGTVFR 119


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +3

Query: 105 DILGXEMXRIIWDLIKEKLILPFLDIELHVYDL-GMENRDKTDDQVTIDCAEAIKKYNVG 281
           D +G E    + ++ K   +     IE    D+ GME  +K+      +  +++K+  VG
Sbjct: 29  DGIGRETSNAVTEIFKTANV----PIEFEEIDVTGMEKNNKSSGDALHEAIQSLKRNKVG 84

Query: 282 IKCATITPDEK 314
           +K    TP EK
Sbjct: 85  LKGILFTPFEK 95


>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/95 (18%), Positives = 40/95 (42%)
 Frame = +1

Query: 547 ESGEAIKHVVHEYKGAGVALAMFNTDASIIDFAHSSFKFALDRXYPLYLSTKNTILKKYD 726
           +SG+ + H V  Y+G  +  A+   D +  D      K  ++R Y    + +  I++   
Sbjct: 154 DSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIK 213

Query: 727 GRFKDIFQDIYDREYXKQFEDAGIWYEHRLIDDMV 831
            +   +  D +++E     + + +   + L D  V
Sbjct: 214 EKLCYVALD-FEQELQTAAQSSSLEKSYELPDGQV 247


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 24.2 bits (50), Expect(2) = 1.3
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -3

Query: 636 NNRCISVKHSQ--CYTCTLVLMNYMFYCLTRFRFE 538
           NN   +++ S   C TC  ++ N  F+C   F F+
Sbjct: 49  NNNSPTLRSSSVACNTCLKIIRNDSFHCTKCFDFD 83



 Score = 22.6 bits (46), Expect(2) = 1.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 450 FVPPCYKSRYILANNSLP 397
           F+ PC K  ++L  +S+P
Sbjct: 94  FLHPCPKPHFVLVRSSIP 111


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
 Frame = -3

Query: 591 TLVLMNYMFYCLTRFRFEDYFKSTSTWDNKVSCF--------VLISMSMTSNDDGFVPPC 436
           +L   +Y + C T F    + K  ++ +    CF        + I   +  +D GFV P 
Sbjct: 237 SLFAHHYSYRCNTWFYLSKHMKKVASANMDAQCFYVQNSFYKITILYEIKFDDLGFVQPN 296

Query: 435 YKSRYILANNS 403
           Y   YIL N +
Sbjct: 297 YCISYILKNQN 307


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 838 HKPPYHQLACVHTRYQHPQTVSGT-PCHK 755
           HKP  H+  C H R+  P   +GT P HK
Sbjct: 305 HKPWKHEEHCHHGRFPRPVPHNGTKPDHK 333



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 838 HKPPYHQLACVHTRYQHPQTVSGT-PCHK 755
           HKP  H+  C H ++  P   +GT P HK
Sbjct: 193 HKPWKHEEHCHHGKFPRPVPHNGTKPDHK 221



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 838 HKPPYHQLACVHTRYQHPQTVSGT-PCHK 755
           HKP  H+  C H ++  P   +GT P HK
Sbjct: 388 HKPWKHEEHCHHGKFPRPVPHNGTKPDHK 416


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -1

Query: 407 IAXPENSTTKNITDGPIRAFPHFLQFKFFNSLLIRSYGRTFDAHI 273
           I  PEN TT  ++ GP      F   +  +  L++  GRTF   I
Sbjct: 595 IVPPENITTILVSQGPAGVPFEFTHKRKDDENLLKDLGRTFQNFI 639


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 156 KLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIK 266
           +LI+ F D ELH +     N+   +     D AEA+K
Sbjct: 400 RLIMKFSDSELHTFLFHCVNKIVANTTENSDSAEAVK 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,205,508
Number of Sequences: 5004
Number of extensions: 66039
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)